Cluster: Rep_3477_CGC36
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_3477
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3477_c_0 | Rep_3477_c_0_2813 | 2876758 | 2877849 | - | CE2 |
| pfam | Rep_3477_c_0 | Rep_3477_c_0_2814 | 2878196 | 2878723 | + | DUF1003 |
| NULL(UNKNOWN) | Rep_3477_c_0 | Rep_3477_c_0_2815 | 2879197 | 2879700 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3477_c_0 | Rep_3477_c_0_2816 | 2879870 | 2881507 | - | GH10 |
| peptidase | Rep_3477_c_0 | Rep_3477_c_0_2817 | 2881755 | 2883290 | + | S09.UPW |
| CAZyme | Rep_3477_c_0 | Rep_3477_c_0_2818 | 2883287 | 2884687 | + | GH43_35 |
| CAZyme | Rep_3477_c_0 | Rep_3477_c_0_2819 | 2885084 | 2886424 | + | GH43_35 |
| CAZyme | Rep_3477_c_0 | Rep_3477_c_0_2820 | 2886503 | 2887984 | - | CBM91 | GH43_10 |
| pfam | Rep_3477_c_0 | Rep_3477_c_0_2821 | 2888359 | 2889828 | - | SBP_bac_1 |
| pfam | Rep_3477_c_0 | Rep_3477_c_0_2822 | 2890861 | 2891508 | - | TAL_FSA |
| CAZyme | Rep_3477_c_0 | Rep_3477_c_0_2823 | 2891637 | 2893604 | - | GH67 |
| CAZyme | Rep_3477_c_0 | Rep_3477_c_0_2824 | 2893610 | 2894836 | - | GH10 |
| CAZyme | Rep_3477_c_0 | Rep_3477_c_0_2825 | 2894850 | 2897420 | - | CE20 | CE20 |
| pfam | Rep_3477_c_0 | Rep_3477_c_0_2826 | 2897468 | 2898991 | - | FGGY_N | FGGY_C |
| NULL(UNKNOWN) | Rep_3477_c_0 | Rep_3477_c_0_2827 | 2899159 | 2900481 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3477_c_0 | Rep_3477_c_0_2828 | 2900504 | 2902582 | - | GH3 |
| NULL(UNKNOWN) | Rep_3477_c_0 | Rep_3477_c_0_2829 | 2902610 | 2903524 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_3477_c_0 | Rep_3477_c_0_2830 | 2903896 | 2904759 | + | HTH_AraC | HTH_AraC |
| TC | Rep_3477_c_0 | Rep_3477_c_0_2831 | 2904827 | 2906743 | - | 9.B.34.1.2 |
| TC | Rep_3477_c_0 | Rep_3477_c_0_2832 | 2906949 | 2907920 | - | 3.A.1.1.29 |
| TC | Rep_3477_c_0 | Rep_3477_c_0_2833 | 2907941 | 2908882 | - | 3.A.1.1.29 |
| TC | Rep_3477_c_0 | Rep_3477_c_0_2834 | 2908981 | 2910708 | - | 3.A.1.1.29 |
Gene ID: Rep_3477_c_0_2813
Type: CAZyme
Location: 2876758 - 2877849 (-)
Type: CAZyme
Location: 2876758 - 2877849 (-)
Gene ID: Rep_3477_c_0_2814
Type: pfam
Location: 2878196 - 2878723 (+)
Type: pfam
Location: 2878196 - 2878723 (+)
Gene ID: Rep_3477_c_0_2815
Type:
Location: 2879197 - 2879700 (+)
Type:
Location: 2879197 - 2879700 (+)
Gene ID: Rep_3477_c_0_2816
Type: CAZyme
Location: 2879870 - 2881507 (-)
Type: CAZyme
Location: 2879870 - 2881507 (-)
Gene ID: Rep_3477_c_0_2817
Type: peptidase
Location: 2881755 - 2883290 (+)
Type: peptidase
Location: 2881755 - 2883290 (+)
Gene ID: Rep_3477_c_0_2818
Type: CAZyme
Location: 2883287 - 2884687 (+)
Type: CAZyme
Location: 2883287 - 2884687 (+)
Gene ID: Rep_3477_c_0_2819
Type: CAZyme
Location: 2885084 - 2886424 (+)
Type: CAZyme
Location: 2885084 - 2886424 (+)
Gene ID: Rep_3477_c_0_2820
Type: CAZyme
Location: 2886503 - 2887984 (-)
Type: CAZyme
Location: 2886503 - 2887984 (-)
Gene ID: Rep_3477_c_0_2821
Type: pfam
Location: 2888359 - 2889828 (-)
Type: pfam
Location: 2888359 - 2889828 (-)
Gene ID: Rep_3477_c_0_2822
Type: pfam
Location: 2890861 - 2891508 (-)
Type: pfam
Location: 2890861 - 2891508 (-)
Gene ID: Rep_3477_c_0_2823
Type: CAZyme
Location: 2891637 - 2893604 (-)
Type: CAZyme
Location: 2891637 - 2893604 (-)
Gene ID: Rep_3477_c_0_2824
Type: CAZyme
Location: 2893610 - 2894836 (-)
Type: CAZyme
Location: 2893610 - 2894836 (-)
Gene ID: Rep_3477_c_0_2825
Type: CAZyme
Location: 2894850 - 2897420 (-)
Type: CAZyme
Location: 2894850 - 2897420 (-)
Gene ID: Rep_3477_c_0_2826
Type: pfam
Location: 2897468 - 2898991 (-)
Type: pfam
Location: 2897468 - 2898991 (-)
Gene ID: Rep_3477_c_0_2827
Type:
Location: 2899159 - 2900481 (-)
Type:
Location: 2899159 - 2900481 (-)
Gene ID: Rep_3477_c_0_2828
Type: CAZyme
Location: 2900504 - 2902582 (-)
Type: CAZyme
Location: 2900504 - 2902582 (-)
Gene ID: Rep_3477_c_0_2829
Type:
Location: 2902610 - 2903524 (-)
Type:
Location: 2902610 - 2903524 (-)
Gene ID: Rep_3477_c_0_2830
Type: TF
Location: 2903896 - 2904759 (+)
Type: TF
Location: 2903896 - 2904759 (+)
Gene ID: Rep_3477_c_0_2831
Type: TC
Location: 2904827 - 2906743 (-)
Type: TC
Location: 2904827 - 2906743 (-)
Gene ID: Rep_3477_c_0_2832
Type: TC
Location: 2906949 - 2907920 (-)
Type: TC
Location: 2906949 - 2907920 (-)
Gene ID: Rep_3477_c_0_2833
Type: TC
Location: 2907941 - 2908882 (-)
Type: TC
Location: 2907941 - 2908882 (-)
Gene ID: Rep_3477_c_0_2834
Type: TC
Location: 2908981 - 2910708 (-)
Type: TC
Location: 2908981 - 2910708 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Huintestinicola
Species
Huintestinicola butyrica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3477_c_0_2821 | vegetarian > omnivore | 1.07396 | 0.03635 |
| Rep_3477_c_0_2822 | vegan > omnivore | 1.51115 | 0.04811 |
| Rep_3477_c_0_2827 | vegetarian > omnivore | 1.26043 | 0.01753 |