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Cluster: Rep_3473_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3473_c_2 Rep_3473_c_2_745 804947 806458 + 9.A.11.1.2
NULL(UNKNOWN) Rep_3473_c_2 Rep_3473_c_2_746 806451 807524 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3473_c_2 Rep_3473_c_2_747 807514 808587 + Spore_GerAC
TC Rep_3473_c_2 Rep_3473_c_2_748 808568 809089 - 9.B.156.3.1
TC Rep_3473_c_2 Rep_3473_c_2_749 809082 809699 - 9.B.156.3.1
TF Rep_3473_c_2 Rep_3473_c_2_750 810141 810380 + SpoVT_AbrB
TC Rep_3473_c_2 Rep_3473_c_2_751 810395 811555 + 8.A.59.4.2
TF Rep_3473_c_2 Rep_3473_c_2_752 811595 812329 - HTH_AraC | HTH_AraC
CAZyme Rep_3473_c_2 Rep_3473_c_2_753 812893 814062 - GH5_4
CAZyme Rep_3473_c_2 Rep_3473_c_2_754 814079 815422 - GH43_35
CAZyme Rep_3473_c_2 Rep_3473_c_2_755 815511 816782 - GH27
CAZyme Rep_3473_c_2 Rep_3473_c_2_756 816796 818271 - CBM91 | GH43_12
pfam Rep_3473_c_2 Rep_3473_c_2_757 818403 818741 - DUF1284
TC Rep_3473_c_2 Rep_3473_c_2_758 818767 819345 - 3.A.1.25.5
Gene ID: Rep_3473_c_2_745
Type: TC
Location: 804947 - 806458 (+)
Gene ID: Rep_3473_c_2_746
Type:
Location: 806451 - 807524 (+)
Gene ID: Rep_3473_c_2_747
Type: pfam
Location: 807514 - 808587 (+)
Gene ID: Rep_3473_c_2_748
Type: TC
Location: 808568 - 809089 (-)
Gene ID: Rep_3473_c_2_749
Type: TC
Location: 809082 - 809699 (-)
Gene ID: Rep_3473_c_2_750
Type: TF
Location: 810141 - 810380 (+)
Gene ID: Rep_3473_c_2_751
Type: TC
Location: 810395 - 811555 (+)
Gene ID: Rep_3473_c_2_752
Type: TF
Location: 811595 - 812329 (-)
Gene ID: Rep_3473_c_2_753
Type: CAZyme
Location: 812893 - 814062 (-)
Gene ID: Rep_3473_c_2_754
Type: CAZyme
Location: 814079 - 815422 (-)
Gene ID: Rep_3473_c_2_755
Type: CAZyme
Location: 815511 - 816782 (-)
Gene ID: Rep_3473_c_2_756
Type: CAZyme
Location: 816796 - 818271 (-)
Gene ID: Rep_3473_c_2_757
Type: pfam
Location: 818403 - 818741 (-)
Gene ID: Rep_3473_c_2_758
Type: TC
Location: 818767 - 819345 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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