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Cluster: Rep_3473_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3473_c_2 Rep_3473_c_2_201 245237 247237 - 2.A.16.2.2
STP Rep_3473_c_2 Rep_3473_c_2_202 247238 247888 - HhH-GPD
TF Rep_3473_c_2 Rep_3473_c_2_203 247885 248757 - HTH_AraC | HTH_AraC
TC Rep_3473_c_2 Rep_3473_c_2_204 248993 250483 + 3.A.1.1.29
TC Rep_3473_c_2 Rep_3473_c_2_205 250498 251460 + 3.A.1.1.29
TC Rep_3473_c_2 Rep_3473_c_2_206 251536 252162 + 9.B.28.1.2
CAZyme Rep_3473_c_2 Rep_3473_c_2_207 252937 254601 - CBM35 | GH26
pfam Rep_3473_c_2 Rep_3473_c_2_208 254613 255533 - SUFBD_core
TC Rep_3473_c_2 Rep_3473_c_2_209 255558 256289 - 3.A.1.26.9
Gene ID: Rep_3473_c_2_201
Type: TC
Location: 245237 - 247237 (-)
Gene ID: Rep_3473_c_2_202
Type: STP
Location: 247238 - 247888 (-)
Gene ID: Rep_3473_c_2_203
Type: TF
Location: 247885 - 248757 (-)
Gene ID: Rep_3473_c_2_204
Type: TC
Location: 248993 - 250483 (+)
Gene ID: Rep_3473_c_2_205
Type: TC
Location: 250498 - 251460 (+)
Gene ID: Rep_3473_c_2_206
Type: TC
Location: 251536 - 252162 (+)
Gene ID: Rep_3473_c_2_207
Type: CAZyme
Location: 252937 - 254601 (-)
Gene ID: Rep_3473_c_2_208
Type: pfam
Location: 254613 - 255533 (-)
Gene ID: Rep_3473_c_2_209
Type: TC
Location: 255558 - 256289 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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