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Cluster: Rep_3473_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3473_c_2 Rep_3473_c_2_34 31138 32295 + 2.A.103.1.2
TC Rep_3473_c_2 Rep_3473_c_2_35 32721 34487 + 3.A.1.106.3
TC Rep_3473_c_2 Rep_3473_c_2_36 34488 36257 + 3.A.1.106.3
pfam Rep_3473_c_2 Rep_3473_c_2_37 36626 38776 - S1 | Tex_N | HHH_3 | HHH_7 | Tex_YqgF | HHH_9 | Tex_central_region | S1_RRP5
STP Rep_3473_c_2 Rep_3473_c_2_38 39051 39677 + TetR_N
TC Rep_3473_c_2 Rep_3473_c_2_39 39869 40570 + 3.A.1.134.11
pfam Rep_3473_c_2 Rep_3473_c_2_40 40570 43536 + FtsX | FtsX
pfam Rep_3473_c_2 Rep_3473_c_2_41 43990 44211 - DUF6514
CAZyme Rep_3473_c_2 Rep_3473_c_2_42 44594 46138 + GH13_44
TC Rep_3473_c_2 Rep_3473_c_2_43 47033 48094 - 3.A.15.2.1
pfam Rep_3473_c_2 Rep_3473_c_2_44 48110 48655 - CobU
TC Rep_3473_c_2 Rep_3473_c_2_45 48675 49712 - 9.B.34.1.3
TC Rep_3473_c_2 Rep_3473_c_2_46 49928 51751 + 8.A.59.2.2
Gene ID: Rep_3473_c_2_34
Type: TC
Location: 31138 - 32295 (+)
Gene ID: Rep_3473_c_2_35
Type: TC
Location: 32721 - 34487 (+)
Gene ID: Rep_3473_c_2_36
Type: TC
Location: 34488 - 36257 (+)
Gene ID: Rep_3473_c_2_37
Type: pfam
Location: 36626 - 38776 (-)
Gene ID: Rep_3473_c_2_38
Type: STP
Location: 39051 - 39677 (+)
Gene ID: Rep_3473_c_2_39
Type: TC
Location: 39869 - 40570 (+)
Gene ID: Rep_3473_c_2_40
Type: pfam
Location: 40570 - 43536 (+)
Gene ID: Rep_3473_c_2_41
Type: pfam
Location: 43990 - 44211 (-)
Gene ID: Rep_3473_c_2_42
Type: CAZyme
Location: 44594 - 46138 (+)
Gene ID: Rep_3473_c_2_43
Type: TC
Location: 47033 - 48094 (-)
Gene ID: Rep_3473_c_2_44
Type: pfam
Location: 48110 - 48655 (-)
Gene ID: Rep_3473_c_2_45
Type: TC
Location: 48675 - 49712 (-)
Gene ID: Rep_3473_c_2_46
Type: TC
Location: 49928 - 51751 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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