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Cluster: Rep_3473_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3473_c_1 Rep_3473_c_1_1141 1248820 1250154 + 9.B.160.1.10
CAZyme Rep_3473_c_1 Rep_3473_c_1_1142 1250895 1252070 - CE2
CAZyme Rep_3473_c_1 Rep_3473_c_1_1143 1252082 1252708 - CE4
CAZyme Rep_3473_c_1 Rep_3473_c_1_1144 1252911 1254389 + GH51_1
pfam Rep_3473_c_1 Rep_3473_c_1_1145 1254391 1254645 + DUF6171
TC Rep_3473_c_1 Rep_3473_c_1_1146 1254886 1256847 - 1.B.52.2.2
pfam Rep_3473_c_1 Rep_3473_c_1_1147 1257369 1258343 + SpoU_methylase | SpoU_sub_bind
NULL(UNKNOWN) Rep_3473_c_1 Rep_3473_c_1_1148 1258365 1261097 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3473_c_1 Rep_3473_c_1_1149 1261112 1263079 + 1.B.52.2.1
Gene ID: Rep_3473_c_1_1141
Type: TC
Location: 1248820 - 1250154 (+)
Gene ID: Rep_3473_c_1_1142
Type: CAZyme
Location: 1250895 - 1252070 (-)
Gene ID: Rep_3473_c_1_1143
Type: CAZyme
Location: 1252082 - 1252708 (-)
Gene ID: Rep_3473_c_1_1144
Type: CAZyme
Location: 1252911 - 1254389 (+)
Gene ID: Rep_3473_c_1_1145
Type: pfam
Location: 1254391 - 1254645 (+)
Gene ID: Rep_3473_c_1_1146
Type: TC
Location: 1254886 - 1256847 (-)
Gene ID: Rep_3473_c_1_1147
Type: pfam
Location: 1257369 - 1258343 (+)
Gene ID: Rep_3473_c_1_1148
Type:
Location: 1258365 - 1261097 (+)
Gene ID: Rep_3473_c_1_1149
Type: TC
Location: 1261112 - 1263079 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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