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Cluster: Rep_3462_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3462_c_62 Rep_3462_c_62_102 119419 120792 - 9.A.40.1.1
pfam Rep_3462_c_62 Rep_3462_c_62_103 120958 122220 - GHL10
CAZyme Rep_3462_c_62 Rep_3462_c_62_104 122483 123613 + GT4
NULL(UNKNOWN) Rep_3462_c_62 Rep_3462_c_62_105 123658 125121 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3462_c_62 Rep_3462_c_62_106 125158 126177 + Acyl_transf_3
CAZyme Rep_3462_c_62 Rep_3462_c_62_107 126174 127379 + GT4
pfam Rep_3462_c_62 Rep_3462_c_62_108 127396 128580 + Radical_SAM | SPASM
CAZyme Rep_3462_c_62 Rep_3462_c_62_109 128605 129693 + GT4
CAZyme Rep_3462_c_62 Rep_3462_c_62_110 129716 130747 + GT2
Gene ID: Rep_3462_c_62_102
Type: TC
Location: 119419 - 120792 (-)
Gene ID: Rep_3462_c_62_103
Type: pfam
Location: 120958 - 122220 (-)
Gene ID: Rep_3462_c_62_104
Type: CAZyme
Location: 122483 - 123613 (+)
Gene ID: Rep_3462_c_62_105
Type:
Location: 123658 - 125121 (+)
Gene ID: Rep_3462_c_62_106
Type: pfam
Location: 125158 - 126177 (+)
Gene ID: Rep_3462_c_62_107
Type: CAZyme
Location: 126174 - 127379 (+)
Gene ID: Rep_3462_c_62_108
Type: pfam
Location: 127396 - 128580 (+)
Gene ID: Rep_3462_c_62_109
Type: CAZyme
Location: 128605 - 129693 (+)
Gene ID: Rep_3462_c_62_110
Type: CAZyme
Location: 129716 - 130747 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
FB2012
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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