Cluster: Rep_3459_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3459
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3459_c_0 | Rep_3459_c_0_18 | 22409 | 23590 | + | GT4 |
| NULL(UNKNOWN) | Rep_3459_c_0 | Rep_3459_c_0_19 | 23535 | 24905 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3459_c_0 | Rep_3459_c_0_20 | 24896 | 25687 | + | GT2 |
| pfam | Rep_3459_c_0 | Rep_3459_c_0_21 | 25846 | 27147 | + | ABC2_membrane |
| TC | Rep_3459_c_0 | Rep_3459_c_0_22 | 27162 | 27917 | + | 3.A.1.103.1 |
Gene ID: Rep_3459_c_0_18
Type: CAZyme
Location: 22409 - 23590 (+)
Type: CAZyme
Location: 22409 - 23590 (+)
Gene ID: Rep_3459_c_0_19
Type:
Location: 23535 - 24905 (+)
Type:
Location: 23535 - 24905 (+)
Gene ID: Rep_3459_c_0_20
Type: CAZyme
Location: 24896 - 25687 (+)
Type: CAZyme
Location: 24896 - 25687 (+)
Gene ID: Rep_3459_c_0_21
Type: pfam
Location: 25846 - 27147 (+)
Type: pfam
Location: 25846 - 27147 (+)
Gene ID: Rep_3459_c_0_22
Type: TC
Location: 27162 - 27917 (+)
Type: TC
Location: 27162 - 27917 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E sp017935365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.