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Cluster: Rep_3396_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3396_c_29 Rep_3396_c_29_6 5274 5852 + 2.A.51.1.6
pfam Rep_3396_c_29 Rep_3396_c_29_7 6108 6362 - SASP
NULL(UNKNOWN) Rep_3396_c_29 Rep_3396_c_29_8 6437 6988 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3396_c_29 Rep_3396_c_29_9 7294 13338 + CBM9
pfam Rep_3396_c_29 Rep_3396_c_29_10 13485 13868 - DUF3899
TC Rep_3396_c_29 Rep_3396_c_29_11 13865 15070 - 3.A.1.5.19
TC Rep_3396_c_29 Rep_3396_c_29_12 15060 17222 - 3.A.1.5.25
TC Rep_3396_c_29 Rep_3396_c_29_13 17227 18798 - 3.A.1.5.19
TC Rep_3396_c_29 Rep_3396_c_29_14 18800 19780 - 3.A.1.5.19
Gene ID: Rep_3396_c_29_6
Type: TC
Location: 5274 - 5852 (+)
Gene ID: Rep_3396_c_29_7
Type: pfam
Location: 6108 - 6362 (-)
Gene ID: Rep_3396_c_29_8
Type:
Location: 6437 - 6988 (-)
Gene ID: Rep_3396_c_29_9
Type: CAZyme
Location: 7294 - 13338 (+)
Gene ID: Rep_3396_c_29_10
Type: pfam
Location: 13485 - 13868 (-)
Gene ID: Rep_3396_c_29_11
Type: TC
Location: 13865 - 15070 (-)
Gene ID: Rep_3396_c_29_12
Type: TC
Location: 15060 - 17222 (-)
Gene ID: Rep_3396_c_29_13
Type: TC
Location: 17227 - 18798 (-)
Gene ID: Rep_3396_c_29_14
Type: TC
Location: 18800 - 19780 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3396_c_29_13 vegetarian > vegan 2.79346 0.00229
Rep_3396_c_29_14 vegetarian > vegan 3.68495 0.00229

🧭 Explore Read Mapping of CGC

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