Cluster: Rep_3396_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3396
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3396_c_24 | Rep_3396_c_24_16 | 13847 | 15577 | - | GH35 |
| TC | Rep_3396_c_24 | Rep_3396_c_24_17 | 15715 | 17094 | + | 2.A.38.4.1 |
| NULL(UNKNOWN) | Rep_3396_c_24 | Rep_3396_c_24_18 | 17164 | 17829 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3396_c_24 | Rep_3396_c_24_19 | 17938 | 18660 | - | AP_endonuc_2 |
| TC | Rep_3396_c_24 | Rep_3396_c_24_20 | 18782 | 19729 | - | 3.A.1.125.1 |
| TC | Rep_3396_c_24 | Rep_3396_c_24_21 | 19726 | 20430 | - | 3.A.1.122.14 |
Gene ID: Rep_3396_c_24_16
Type: CAZyme
Location: 13847 - 15577 (-)
Type: CAZyme
Location: 13847 - 15577 (-)
Gene ID: Rep_3396_c_24_17
Type: TC
Location: 15715 - 17094 (+)
Type: TC
Location: 15715 - 17094 (+)
Gene ID: Rep_3396_c_24_18
Type:
Location: 17164 - 17829 (-)
Type:
Location: 17164 - 17829 (-)
Gene ID: Rep_3396_c_24_19
Type: pfam
Location: 17938 - 18660 (-)
Type: pfam
Location: 17938 - 18660 (-)
Gene ID: Rep_3396_c_24_20
Type: TC
Location: 18782 - 19729 (-)
Type: TC
Location: 18782 - 19729 (-)
Gene ID: Rep_3396_c_24_21
Type: TC
Location: 19726 - 20430 (-)
Type: TC
Location: 19726 - 20430 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp900555435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.