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Cluster: Rep_3382_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3382_c_2 Rep_3382_c_2_109 98774 100414 - 8.A.7.1.1
STP Rep_3382_c_2 Rep_3382_c_2_110 100734 100964 + FeoA
TC Rep_3382_c_2 Rep_3382_c_2_111 100961 102973 + 9.A.8.1.6
TC Rep_3382_c_2 Rep_3382_c_2_112 103256 104047 - 2.A.5.5.2
TC Rep_3382_c_2 Rep_3382_c_2_113 104264 105979 - 8.A.7.1.1
STP Rep_3382_c_2 Rep_3382_c_2_114 106012 106275 - PTS-HPr
TC Rep_3382_c_2 Rep_3382_c_2_115 106326 108251 - 4.A.2.1.20
STP Rep_3382_c_2 Rep_3382_c_2_116 108269 109174 - PfkB
TF Rep_3382_c_2 Rep_3382_c_2_117 109176 109922 - HTH_DeoR
CAZyme Rep_3382_c_2 Rep_3382_c_2_118 110257 111546 - GH109
TC Rep_3382_c_2 Rep_3382_c_2_119 111825 112622 - 1.A.26.1.2
Gene ID: Rep_3382_c_2_109
Type: TC
Location: 98774 - 100414 (-)
Gene ID: Rep_3382_c_2_110
Type: STP
Location: 100734 - 100964 (+)
Gene ID: Rep_3382_c_2_111
Type: TC
Location: 100961 - 102973 (+)
Gene ID: Rep_3382_c_2_112
Type: TC
Location: 103256 - 104047 (-)
Gene ID: Rep_3382_c_2_113
Type: TC
Location: 104264 - 105979 (-)
Gene ID: Rep_3382_c_2_114
Type: STP
Location: 106012 - 106275 (-)
Gene ID: Rep_3382_c_2_115
Type: TC
Location: 106326 - 108251 (-)
Gene ID: Rep_3382_c_2_116
Type: STP
Location: 108269 - 109174 (-)
Gene ID: Rep_3382_c_2_117
Type: TF
Location: 109176 - 109922 (-)
Gene ID: Rep_3382_c_2_118
Type: CAZyme
Location: 110257 - 111546 (-)
Gene ID: Rep_3382_c_2_119
Type: TC
Location: 111825 - 112622 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3382_c_2_117 omnivore > vegetarian 18.31581 0.03285

🧭 Explore Read Mapping of CGC

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