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Cluster: Rep_3382_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3382_c_1 Rep_3382_c_1_14 11810 13540 + 3.A.1.24.1
TC Rep_3382_c_1 Rep_3382_c_1_15 13652 14611 + 3.A.1.24.1
TC Rep_3382_c_1 Rep_3382_c_1_16 14611 15273 + 3.A.1.24.5
pfam Rep_3382_c_1 Rep_3382_c_1_17 15290 16423 + URO-D
pfam Rep_3382_c_1 Rep_3382_c_1_18 16697 17458 - adh_short | KR | adh_short_C2
TC Rep_3382_c_1 Rep_3382_c_1_19 17753 19129 - 2.A.66.1.33
peptidase Rep_3382_c_1 Rep_3382_c_1_20 19495 21480 + S09.UPA
TC Rep_3382_c_1 Rep_3382_c_1_21 21579 22658 - 1.A.23.4.2
pfam Rep_3382_c_1 Rep_3382_c_1_22 22833 23831 - DUF4349
CAZyme Rep_3382_c_1 Rep_3382_c_1_23 24113 25654 + GH77
CAZyme Rep_3382_c_1 Rep_3382_c_1_24 25658 27931 + GT35
pfam Rep_3382_c_1 Rep_3382_c_1_25 27960 28235 + Se_S_carrier
pfam Rep_3382_c_1 Rep_3382_c_1_26 28729 29451 + ABC_membrane
TC Rep_3382_c_1 Rep_3382_c_1_27 29414 30589 + 3.A.1.210.9
TC Rep_3382_c_1 Rep_3382_c_1_28 30595 32433 + 3.A.1.106.3
pfam Rep_3382_c_1 Rep_3382_c_1_29 32483 32992 + Acetyltransf_1 | Acetyltransf_7
peptidase Rep_3382_c_1 Rep_3382_c_1_30 33093 34535 - M20.UNW
TC Rep_3382_c_1 Rep_3382_c_1_31 34839 36194 + 2.A.66.1.45
TF Rep_3382_c_1 Rep_3382_c_1_32 36403 36969 + HTH_3
pfam Rep_3382_c_1 Rep_3382_c_1_33 37114 37635 + Macro
TC Rep_3382_c_1 Rep_3382_c_1_34 37681 38250 - 2.A.107.1.2
Gene ID: Rep_3382_c_1_14
Type: TC
Location: 11810 - 13540 (+)
Gene ID: Rep_3382_c_1_15
Type: TC
Location: 13652 - 14611 (+)
Gene ID: Rep_3382_c_1_16
Type: TC
Location: 14611 - 15273 (+)
Gene ID: Rep_3382_c_1_17
Type: pfam
Location: 15290 - 16423 (+)
Gene ID: Rep_3382_c_1_18
Type: pfam
Location: 16697 - 17458 (-)
Gene ID: Rep_3382_c_1_19
Type: TC
Location: 17753 - 19129 (-)
Gene ID: Rep_3382_c_1_20
Type: peptidase
Location: 19495 - 21480 (+)
Gene ID: Rep_3382_c_1_21
Type: TC
Location: 21579 - 22658 (-)
Gene ID: Rep_3382_c_1_22
Type: pfam
Location: 22833 - 23831 (-)
Gene ID: Rep_3382_c_1_23
Type: CAZyme
Location: 24113 - 25654 (+)
Gene ID: Rep_3382_c_1_24
Type: CAZyme
Location: 25658 - 27931 (+)
Gene ID: Rep_3382_c_1_25
Type: pfam
Location: 27960 - 28235 (+)
Gene ID: Rep_3382_c_1_26
Type: pfam
Location: 28729 - 29451 (+)
Gene ID: Rep_3382_c_1_27
Type: TC
Location: 29414 - 30589 (+)
Gene ID: Rep_3382_c_1_28
Type: TC
Location: 30595 - 32433 (+)
Gene ID: Rep_3382_c_1_29
Type: pfam
Location: 32483 - 32992 (+)
Gene ID: Rep_3382_c_1_30
Type: peptidase
Location: 33093 - 34535 (-)
Gene ID: Rep_3382_c_1_31
Type: TC
Location: 34839 - 36194 (+)
Gene ID: Rep_3382_c_1_32
Type: TF
Location: 36403 - 36969 (+)
Gene ID: Rep_3382_c_1_33
Type: pfam
Location: 37114 - 37635 (+)
Gene ID: Rep_3382_c_1_34
Type: TC
Location: 37681 - 38250 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3382_c_1_28 omnivore > vegetarian 1.61390 0.03330

🧭 Explore Read Mapping of CGC

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