Cluster: Rep_3382_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3382
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3382_c_0 | Rep_3382_c_0_587 | 541162 | 541929 | + | 2.A.79.1.4 |
| TC | Rep_3382_c_0 | Rep_3382_c_0_588 | 541951 | 542427 | + | 2.A.79.1.5 |
| CAZyme | Rep_3382_c_0 | Rep_3382_c_0_589 | 542657 | 543421 | + | GT2 |
Gene ID: Rep_3382_c_0_587
Type: TC
Location: 541162 - 541929 (+)
Type: TC
Location: 541162 - 541929 (+)
Gene ID: Rep_3382_c_0_588
Type: TC
Location: 541951 - 542427 (+)
Type: TC
Location: 541951 - 542427 (+)
Gene ID: Rep_3382_c_0_589
Type: CAZyme
Location: 542657 - 543421 (+)
Type: CAZyme
Location: 542657 - 543421 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Negativibacillus
Species
Negativibacillus sp000435195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3382_c_0_587 | omnivore > vegetarian | 3.51472 | 0.03285 |
| Rep_3382_c_0_588 | omnivore > vegetarian | 4.20077 | 0.03386 |
| Rep_3382_c_0_589 | omnivore > vegetarian | 1.71247 | 0.03811 |