Cluster: Rep_3382_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3382
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3382_c_2 | Rep_3382_c_2_491 | 513563 | 516373 | + | 3.A.3.5.23 |
| TF | Rep_3382_c_2 | Rep_3382_c_2_492 | 516503 | 517078 | - | Pencillinase_R |
| STP | Rep_3382_c_2 | Rep_3382_c_2_493 | 517138 | 518037 | + | HhH-GPD |
| CAZyme | Rep_3382_c_2 | Rep_3382_c_2_494 | 518034 | 519119 | + | GH18 |
Gene ID: Rep_3382_c_2_491
Type: TC
Location: 513563 - 516373 (+)
Type: TC
Location: 513563 - 516373 (+)
Gene ID: Rep_3382_c_2_492
Type: TF
Location: 516503 - 517078 (-)
Type: TF
Location: 516503 - 517078 (-)
Gene ID: Rep_3382_c_2_493
Type: STP
Location: 517138 - 518037 (+)
Type: STP
Location: 517138 - 518037 (+)
Gene ID: Rep_3382_c_2_494
Type: CAZyme
Location: 518034 - 519119 (+)
Type: CAZyme
Location: 518034 - 519119 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Negativibacillus
Species
Negativibacillus sp000435195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3382_c_2_491 | omnivore > vegetarian | 2.26991 | 0.03386 |
| Rep_3382_c_2_492 | omnivore > vegetarian | 2.41618 | 0.03386 |