Cluster: Rep_3321_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3321
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3321_c_40 | Rep_3321_c_40_2 | 954 | 2180 | + | GT4 |
| CAZyme | Rep_3321_c_40 | Rep_3321_c_40_3 | 2137 | 2955 | + | GT2 |
| NULL(UNKNOWN) | Rep_3321_c_40 | Rep_3321_c_40_4 | 2952 | 4355 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3321_c_40 | Rep_3321_c_40_5 | 4333 | 5106 | + | 3.A.1.103.4 |
| TC | Rep_3321_c_40 | Rep_3321_c_40_6 | 5120 | 5881 | + | 3.A.1.103.4 |
Gene ID: Rep_3321_c_40_2
Type: CAZyme
Location: 954 - 2180 (+)
Type: CAZyme
Location: 954 - 2180 (+)
Gene ID: Rep_3321_c_40_3
Type: CAZyme
Location: 2137 - 2955 (+)
Type: CAZyme
Location: 2137 - 2955 (+)
Gene ID: Rep_3321_c_40_4
Type:
Location: 2952 - 4355 (+)
Type:
Location: 2952 - 4355 (+)
Gene ID: Rep_3321_c_40_5
Type: TC
Location: 4333 - 5106 (+)
Type: TC
Location: 4333 - 5106 (+)
Gene ID: Rep_3321_c_40_6
Type: TC
Location: 5120 - 5881 (+)
Type: TC
Location: 5120 - 5881 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
Avispirillum
Species
Avispirillum faecium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.