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Cluster: Rep_322_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_322_c_0 Rep_322_c_0_1051 1283456 1284754 + 9.A.40.2.2
pfam Rep_322_c_0 Rep_322_c_0_1052 1284758 1285168 - DUF3037
pfam Rep_322_c_0 Rep_322_c_0_1053 1285165 1285953 - HipA_2
TC Rep_322_c_0 Rep_322_c_0_1054 1286168 1287142 - 8.A.21.2.2
pfam Rep_322_c_0 Rep_322_c_0_1055 1287149 1287616 - NfeD
STP Rep_322_c_0 Rep_322_c_0_1056 1287769 1288650 - PfkB
TC Rep_322_c_0 Rep_322_c_0_1057 1288656 1289843 - 2.A.1.7.17
CAZyme Rep_322_c_0 Rep_322_c_0_1058 1289847 1291688 - GH32
TF Rep_322_c_0 Rep_322_c_0_1059 1291949 1294678 + HTH_AraC
TC Rep_322_c_0 Rep_322_c_0_1060 1294849 1297971 + 1.B.14.6.1
Gene ID: Rep_322_c_0_1051
Type: TC
Location: 1283456 - 1284754 (+)
Gene ID: Rep_322_c_0_1052
Type: pfam
Location: 1284758 - 1285168 (-)
Gene ID: Rep_322_c_0_1053
Type: pfam
Location: 1285165 - 1285953 (-)
Gene ID: Rep_322_c_0_1054
Type: TC
Location: 1286168 - 1287142 (-)
Gene ID: Rep_322_c_0_1055
Type: pfam
Location: 1287149 - 1287616 (-)
Gene ID: Rep_322_c_0_1056
Type: STP
Location: 1287769 - 1288650 (-)
Gene ID: Rep_322_c_0_1057
Type: TC
Location: 1288656 - 1289843 (-)
Gene ID: Rep_322_c_0_1058
Type: CAZyme
Location: 1289847 - 1291688 (-)
Gene ID: Rep_322_c_0_1059
Type: TF
Location: 1291949 - 1294678 (+)
Gene ID: Rep_322_c_0_1060
Type: TC
Location: 1294849 - 1297971 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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