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Cluster: Rep_322_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_322_c_0 Rep_322_c_0_1920 2366972 2367715 + 3.A.1.122.2
TC Rep_322_c_0 Rep_322_c_0_1921 2367721 2368941 + 3.A.1.122.12
TC Rep_322_c_0 Rep_322_c_0_1922 2368973 2370028 + 9.B.33.1.2
TF Rep_322_c_0 Rep_322_c_0_1923 2370051 2370779 + LytTR
pfam Rep_322_c_0 Rep_322_c_0_1924 2370880 2371155 - ABM
CAZyme Rep_322_c_0 Rep_322_c_0_1925 2371157 2372587 - GH57
CAZyme Rep_322_c_0 Rep_322_c_0_1926 2372590 2373849 - GT4
CAZyme Rep_322_c_0 Rep_322_c_0_1927 2373874 2375838 - GH133
TC Rep_322_c_0 Rep_322_c_0_1928 2376056 2377468 - 9.B.126.2.2
pfam Rep_322_c_0 Rep_322_c_0_1929 2377959 2378594 - DUF308
TC Rep_322_c_0 Rep_322_c_0_1930 2378674 2379333 - 2.A.115.2.14
Gene ID: Rep_322_c_0_1920
Type: TC
Location: 2366972 - 2367715 (+)
Gene ID: Rep_322_c_0_1921
Type: TC
Location: 2367721 - 2368941 (+)
Gene ID: Rep_322_c_0_1922
Type: TC
Location: 2368973 - 2370028 (+)
Gene ID: Rep_322_c_0_1923
Type: TF
Location: 2370051 - 2370779 (+)
Gene ID: Rep_322_c_0_1924
Type: pfam
Location: 2370880 - 2371155 (-)
Gene ID: Rep_322_c_0_1925
Type: CAZyme
Location: 2371157 - 2372587 (-)
Gene ID: Rep_322_c_0_1926
Type: CAZyme
Location: 2372590 - 2373849 (-)
Gene ID: Rep_322_c_0_1927
Type: CAZyme
Location: 2373874 - 2375838 (-)
Gene ID: Rep_322_c_0_1928
Type: TC
Location: 2376056 - 2377468 (-)
Gene ID: Rep_322_c_0_1929
Type: pfam
Location: 2377959 - 2378594 (-)
Gene ID: Rep_322_c_0_1930
Type: TC
Location: 2378674 - 2379333 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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