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Cluster: Rep_322_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_322_c_0 Rep_322_c_0_1626 2016072 2017259 + GT4
NULL(UNKNOWN) Rep_322_c_0 Rep_322_c_0_1627 2017256 2018611 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_322_c_0 Rep_322_c_0_1628 2018626 2019381 + GT2
pfam Rep_322_c_0 Rep_322_c_0_1629 2019490 2020446 + PDDEXK_2
TC Rep_322_c_0 Rep_322_c_0_1630 2020462 2021073 + 9.B.18.1.1
TC Rep_322_c_0 Rep_322_c_0_1631 2021437 2022564 + 9.B.146.1.4
pfam Rep_322_c_0 Rep_322_c_0_1632 2022604 2023329 + CpsB_CapC
TC Rep_322_c_0 Rep_322_c_0_1633 2023374 2023745 - 1.A.43.1.6
Gene ID: Rep_322_c_0_1626
Type: CAZyme
Location: 2016072 - 2017259 (+)
Gene ID: Rep_322_c_0_1627
Type:
Location: 2017256 - 2018611 (+)
Gene ID: Rep_322_c_0_1628
Type: CAZyme
Location: 2018626 - 2019381 (+)
Gene ID: Rep_322_c_0_1629
Type: pfam
Location: 2019490 - 2020446 (+)
Gene ID: Rep_322_c_0_1630
Type: TC
Location: 2020462 - 2021073 (+)
Gene ID: Rep_322_c_0_1631
Type: TC
Location: 2021437 - 2022564 (+)
Gene ID: Rep_322_c_0_1632
Type: pfam
Location: 2022604 - 2023329 (+)
Gene ID: Rep_322_c_0_1633
Type: TC
Location: 2023374 - 2023745 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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