Cluster: Rep_322_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_322
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_322_c_0 | Rep_322_c_0_1321 | 1602714 | 1604735 | - | GH97 |
| pfam | Rep_322_c_0 | Rep_322_c_0_1322 | 1605155 | 1606810 | - | DUF6377 |
| CAZyme | Rep_322_c_0 | Rep_322_c_0_1323 | 1606902 | 1608818 | - | GH87 |
| NULL(UNKNOWN) | Rep_322_c_0 | Rep_322_c_0_1324 | 1609352 | 1610245 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_322_c_0 | Rep_322_c_0_1325 | 1610404 | 1613517 | + | 1.B.14.6.2 |
| pfam | Rep_322_c_0 | Rep_322_c_0_1326 | 1613563 | 1615392 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_322_c_0 | Rep_322_c_0_1327 | 1615624 | 1618260 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_322_c_0 | Rep_322_c_0_1328 | 1618318 | 1622289 | + | GH87 |
| CAZyme | Rep_322_c_0 | Rep_322_c_0_1329 | 1622442 | 1626377 | + | GH87 |
Gene ID: Rep_322_c_0_1321
Type: CAZyme
Location: 1602714 - 1604735 (-)
Type: CAZyme
Location: 1602714 - 1604735 (-)
Gene ID: Rep_322_c_0_1322
Type: pfam
Location: 1605155 - 1606810 (-)
Type: pfam
Location: 1605155 - 1606810 (-)
Gene ID: Rep_322_c_0_1323
Type: CAZyme
Location: 1606902 - 1608818 (-)
Type: CAZyme
Location: 1606902 - 1608818 (-)
Gene ID: Rep_322_c_0_1324
Type:
Location: 1609352 - 1610245 (+)
Type:
Location: 1609352 - 1610245 (+)
Gene ID: Rep_322_c_0_1325
Type: TC
Location: 1610404 - 1613517 (+)
Type: TC
Location: 1610404 - 1613517 (+)
Gene ID: Rep_322_c_0_1326
Type: pfam
Location: 1613563 - 1615392 (+)
Type: pfam
Location: 1613563 - 1615392 (+)
Gene ID: Rep_322_c_0_1327
Type:
Location: 1615624 - 1618260 (+)
Type:
Location: 1615624 - 1618260 (+)
Gene ID: Rep_322_c_0_1328
Type: CAZyme
Location: 1618318 - 1622289 (+)
Type: CAZyme
Location: 1618318 - 1622289 (+)
Gene ID: Rep_322_c_0_1329
Type: CAZyme
Location: 1622442 - 1626377 (+)
Type: CAZyme
Location: 1622442 - 1626377 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp001701295
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.