Cluster: Rep_3085_CGC8
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3085
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3085_c_7 | Rep_3085_c_7_33 | 37856 | 40522 | + | 4.A.2.1.17 |
| TF | Rep_3085_c_7 | Rep_3085_c_7_34 | 40763 | 42661 | + | HTH_11 | Mga |
| TC | Rep_3085_c_7 | Rep_3085_c_7_35 | 42654 | 42971 | + | 4.A.3.2.4 |
| TC | Rep_3085_c_7 | Rep_3085_c_7_36 | 43001 | 43306 | + | 4.A.3.2.2 |
| TC | Rep_3085_c_7 | Rep_3085_c_7_37 | 43342 | 44634 | + | 4.A.3.2.9 |
| CAZyme | Rep_3085_c_7 | Rep_3085_c_7_38 | 44651 | 46078 | + | GH1 |
| pfam | Rep_3085_c_7 | Rep_3085_c_7_39 | 46191 | 47114 | + | Mem_trans | Mem_trans |
| pfam | Rep_3085_c_7 | Rep_3085_c_7_40 | 47566 | 48393 | + | PRD | PRD | CAT_RBD |
| TC | Rep_3085_c_7 | Rep_3085_c_7_41 | 48588 | 50186 | + | 4.A.1.2.11 |
| CAZyme | Rep_3085_c_7 | Rep_3085_c_7_42 | 50243 | 51670 | + | GH1 |
| TC | Rep_3085_c_7 | Rep_3085_c_7_43 | 51663 | 52520 | + | 2.A.115.1.5 |
Gene ID: Rep_3085_c_7_33
Type: TC
Location: 37856 - 40522 (+)
Type: TC
Location: 37856 - 40522 (+)
Gene ID: Rep_3085_c_7_34
Type: TF
Location: 40763 - 42661 (+)
Type: TF
Location: 40763 - 42661 (+)
Gene ID: Rep_3085_c_7_35
Type: TC
Location: 42654 - 42971 (+)
Type: TC
Location: 42654 - 42971 (+)
Gene ID: Rep_3085_c_7_36
Type: TC
Location: 43001 - 43306 (+)
Type: TC
Location: 43001 - 43306 (+)
Gene ID: Rep_3085_c_7_37
Type: TC
Location: 43342 - 44634 (+)
Type: TC
Location: 43342 - 44634 (+)
Gene ID: Rep_3085_c_7_38
Type: CAZyme
Location: 44651 - 46078 (+)
Type: CAZyme
Location: 44651 - 46078 (+)
Gene ID: Rep_3085_c_7_39
Type: pfam
Location: 46191 - 47114 (+)
Type: pfam
Location: 46191 - 47114 (+)
Gene ID: Rep_3085_c_7_40
Type: pfam
Location: 47566 - 48393 (+)
Type: pfam
Location: 47566 - 48393 (+)
Gene ID: Rep_3085_c_7_41
Type: TC
Location: 48588 - 50186 (+)
Type: TC
Location: 48588 - 50186 (+)
Gene ID: Rep_3085_c_7_42
Type: CAZyme
Location: 50243 - 51670 (+)
Type: CAZyme
Location: 50243 - 51670 (+)
Gene ID: Rep_3085_c_7_43
Type: TC
Location: 51663 - 52520 (+)
Type: TC
Location: 51663 - 52520 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3085_c_7_34 | vegan > omnivore | 1.37930 | 0.00861 |
| Rep_3085_c_7_35 | vegan > omnivore | 1.62606 | 0.00861 |
| Rep_3085_c_7_36 | vegan > omnivore | 1.57264 | 0.00861 |
| Rep_3085_c_7_37 | vegan > omnivore | 1.32169 | 0.00861 |
| Rep_3085_c_7_38 | vegan > omnivore | 1.49068 | 0.00861 |
| Rep_3085_c_7_39 | vegan > omnivore | 1.53644 | 0.00861 |
| Rep_3085_c_7_40 | vegetarian > omnivore | 1.15448 | 0.01057 |
| Rep_3085_c_7_40 | vegetarian > vegan | 1.72475 | 0.00565 |
| Rep_3085_c_7_41 | vegetarian > vegan | 1.71688 | 0.00565 |
| Rep_3085_c_7_42 | vegetarian > vegan | 1.98043 | 0.00565 |
| Rep_3085_c_7_43 | vegetarian > omnivore | 1.36496 | 0.01057 |
| Rep_3085_c_7_43 | vegetarian > vegan | 2.18102 | 0.00565 |