Cluster: Rep_3085_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3085
- CGC Family ID: CGCFAM_03192
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3085_c_5 | Rep_3085_c_5_50 | 46496 | 48544 | - | 3.A.24.1.1 |
| NULL(UNKNOWN) | Rep_3085_c_5 | Rep_3085_c_5_51 | 48724 | 49791 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3085_c_5 | Rep_3085_c_5_52 | 49973 | 51928 | + | GH13_14 |
| CAZyme | Rep_3085_c_5 | Rep_3085_c_5_53 | 51993 | 53432 | - | GH1 |
| TC | Rep_3085_c_5 | Rep_3085_c_5_54 | 53569 | 55230 | - | 4.A.1.2.6 |
Gene ID: Rep_3085_c_5_50
Type: TC
Location: 46496 - 48544 (-)
Type: TC
Location: 46496 - 48544 (-)
Gene ID: Rep_3085_c_5_51
Type:
Location: 48724 - 49791 (+)
Type:
Location: 48724 - 49791 (+)
Gene ID: Rep_3085_c_5_52
Type: CAZyme
Location: 49973 - 51928 (+)
Type: CAZyme
Location: 49973 - 51928 (+)
Gene ID: Rep_3085_c_5_53
Type: CAZyme
Location: 51993 - 53432 (-)
Type: CAZyme
Location: 51993 - 53432 (-)
Gene ID: Rep_3085_c_5_54
Type: TC
Location: 53569 - 55230 (-)
Type: TC
Location: 53569 - 55230 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3085_c_5_54 | vegan > omnivore | 1.20816 | 0.00861 |
| Rep_3085_c_5_54 | vegetarian > omnivore | 1.60052 | 0.01057 |