Cluster: Rep_3085_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3085
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3085_c_4 | Rep_3085_c_4_27 | 32962 | 35433 | - | GT51 |
| pfam | Rep_3085_c_4 | Rep_3085_c_4_28 | 35776 | 36150 | + | BofC_C |
| NULL(UNKNOWN) | Rep_3085_c_4 | Rep_3085_c_4_29 | 36275 | 36448 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3085_c_4 | Rep_3085_c_4_30 | 36540 | 38318 | - | 2.A.58.2.2 |
Gene ID: Rep_3085_c_4_27
Type: CAZyme
Location: 32962 - 35433 (-)
Type: CAZyme
Location: 32962 - 35433 (-)
Gene ID: Rep_3085_c_4_28
Type: pfam
Location: 35776 - 36150 (+)
Type: pfam
Location: 35776 - 36150 (+)
Gene ID: Rep_3085_c_4_29
Type:
Location: 36275 - 36448 (+)
Type:
Location: 36275 - 36448 (+)
Gene ID: Rep_3085_c_4_30
Type: TC
Location: 36540 - 38318 (-)
Type: TC
Location: 36540 - 38318 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3085_c_4_29 | vegan > omnivore | 1.58042 | 0.00861 |
| Rep_3085_c_4_29 | vegetarian > omnivore | 1.96068 | 0.01057 |