Cluster: Rep_3085_CGC26
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3085
- CGC Family ID: CGCFAM_01009
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3085_c_31 | Rep_3085_c_31_10 | 7744 | 8259 | - | 3.A.1.26.5 |
| CAZyme | Rep_3085_c_31 | Rep_3085_c_31_11 | 8810 | 11245 | - | GH94 |
| TF | Rep_3085_c_31 | Rep_3085_c_31_12 | 11771 | 12772 | + | LacI |
| NULL(UNKNOWN) | Rep_3085_c_31 | Rep_3085_c_31_13 | 12863 | 14302 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3085_c_31 | Rep_3085_c_31_14 | 14387 | 15370 | + | 3.A.1.1.4 |
| TC | Rep_3085_c_31 | Rep_3085_c_31_15 | 15372 | 16238 | + | 3.A.1.1.48 |
| pfam | Rep_3085_c_31 | Rep_3085_c_31_16 | 16286 | 16696 | - | Pep_deformylase |
| TC | Rep_3085_c_31 | Rep_3085_c_31_17 | 16707 | 17978 | - | 2.A.26.1.9 |
| NULL(UNKNOWN) | Rep_3085_c_31 | Rep_3085_c_31_18 | 18409 | 18519 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3085_c_31 | Rep_3085_c_31_19 | 18652 | 19425 | + | BPD_transp_1 |
| TC | Rep_3085_c_31 | Rep_3085_c_31_20 | 19419 | 19994 | + | 3.A.1.17.12 |
| pfam | Rep_3085_c_31 | Rep_3085_c_31_21 | 20047 | 21129 | - | Radical_SAM | HemN_C |
| TC | Rep_3085_c_31 | Rep_3085_c_31_22 | 21240 | 21944 | + | 1.A.14.2.2 |
Gene ID: Rep_3085_c_31_10
Type: TC
Location: 7744 - 8259 (-)
Type: TC
Location: 7744 - 8259 (-)
Gene ID: Rep_3085_c_31_11
Type: CAZyme
Location: 8810 - 11245 (-)
Type: CAZyme
Location: 8810 - 11245 (-)
Gene ID: Rep_3085_c_31_12
Type: TF
Location: 11771 - 12772 (+)
Type: TF
Location: 11771 - 12772 (+)
Gene ID: Rep_3085_c_31_13
Type:
Location: 12863 - 14302 (+)
Type:
Location: 12863 - 14302 (+)
Gene ID: Rep_3085_c_31_14
Type: TC
Location: 14387 - 15370 (+)
Type: TC
Location: 14387 - 15370 (+)
Gene ID: Rep_3085_c_31_15
Type: TC
Location: 15372 - 16238 (+)
Type: TC
Location: 15372 - 16238 (+)
Gene ID: Rep_3085_c_31_16
Type: pfam
Location: 16286 - 16696 (-)
Type: pfam
Location: 16286 - 16696 (-)
Gene ID: Rep_3085_c_31_17
Type: TC
Location: 16707 - 17978 (-)
Type: TC
Location: 16707 - 17978 (-)
Gene ID: Rep_3085_c_31_18
Type:
Location: 18409 - 18519 (+)
Type:
Location: 18409 - 18519 (+)
Gene ID: Rep_3085_c_31_19
Type: pfam
Location: 18652 - 19425 (+)
Type: pfam
Location: 18652 - 19425 (+)
Gene ID: Rep_3085_c_31_20
Type: TC
Location: 19419 - 19994 (+)
Type: TC
Location: 19419 - 19994 (+)
Gene ID: Rep_3085_c_31_21
Type: pfam
Location: 20047 - 21129 (-)
Type: pfam
Location: 20047 - 21129 (-)
Gene ID: Rep_3085_c_31_22
Type: TC
Location: 21240 - 21944 (+)
Type: TC
Location: 21240 - 21944 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.