Cluster: Rep_3085_CGC25
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3085
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3085_c_29 | Rep_3085_c_29_4 | 3292 | 4170 | + | 3.A.1.4.10 |
| TC | Rep_3085_c_29 | Rep_3085_c_29_5 | 4170 | 5330 | + | 3.A.1.4.8 |
| TC | Rep_3085_c_29 | Rep_3085_c_29_6 | 5327 | 6169 | + | 3.A.1.4.10 |
| TC | Rep_3085_c_29 | Rep_3085_c_29_7 | 6162 | 6884 | + | 3.A.1.4.10 |
| pfam | Rep_3085_c_29 | Rep_3085_c_29_8 | 7033 | 8688 | + | TPP_enzyme_M | TPP_enzyme_C | TPP_enzyme_N |
| NULL(UNKNOWN) | Rep_3085_c_29 | Rep_3085_c_29_9 | 8956 | 9681 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3085_c_29 | Rep_3085_c_29_10 | 9734 | 10678 | + | GT2 |
| TC | Rep_3085_c_29 | Rep_3085_c_29_11 | 10802 | 11575 | - | 3.A.1.3.19 |
| TC | Rep_3085_c_29 | Rep_3085_c_29_12 | 11577 | 12314 | - | 3.A.1.3.16 |
| TC | Rep_3085_c_29 | Rep_3085_c_29_13 | 12358 | 13269 | - | 3.A.1.3.16 |
| TC | Rep_3085_c_29 | Rep_3085_c_29_14 | 13391 | 14116 | - | 3.A.1.3.16 |
| TC | Rep_3085_c_29 | Rep_3085_c_29_15 | 14472 | 15269 | + | 9.B.143.2.3 |
Gene ID: Rep_3085_c_29_4
Type: TC
Location: 3292 - 4170 (+)
Type: TC
Location: 3292 - 4170 (+)
Gene ID: Rep_3085_c_29_5
Type: TC
Location: 4170 - 5330 (+)
Type: TC
Location: 4170 - 5330 (+)
Gene ID: Rep_3085_c_29_6
Type: TC
Location: 5327 - 6169 (+)
Type: TC
Location: 5327 - 6169 (+)
Gene ID: Rep_3085_c_29_7
Type: TC
Location: 6162 - 6884 (+)
Type: TC
Location: 6162 - 6884 (+)
Gene ID: Rep_3085_c_29_8
Type: pfam
Location: 7033 - 8688 (+)
Type: pfam
Location: 7033 - 8688 (+)
Gene ID: Rep_3085_c_29_9
Type:
Location: 8956 - 9681 (+)
Type:
Location: 8956 - 9681 (+)
Gene ID: Rep_3085_c_29_10
Type: CAZyme
Location: 9734 - 10678 (+)
Type: CAZyme
Location: 9734 - 10678 (+)
Gene ID: Rep_3085_c_29_11
Type: TC
Location: 10802 - 11575 (-)
Type: TC
Location: 10802 - 11575 (-)
Gene ID: Rep_3085_c_29_12
Type: TC
Location: 11577 - 12314 (-)
Type: TC
Location: 11577 - 12314 (-)
Gene ID: Rep_3085_c_29_13
Type: TC
Location: 12358 - 13269 (-)
Type: TC
Location: 12358 - 13269 (-)
Gene ID: Rep_3085_c_29_14
Type: TC
Location: 13391 - 14116 (-)
Type: TC
Location: 13391 - 14116 (-)
Gene ID: Rep_3085_c_29_15
Type: TC
Location: 14472 - 15269 (+)
Type: TC
Location: 14472 - 15269 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3085_c_29_9 | vegan > omnivore | 1.12045 | 0.00861 |
| Rep_3085_c_29_9 | vegetarian > omnivore | 1.82489 | 0.01057 |
| Rep_3085_c_29_10 | vegan > omnivore | 1.09623 | 0.00861 |
| Rep_3085_c_29_10 | vegetarian > omnivore | 1.78211 | 0.01057 |