Cluster: Rep_3085_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3085
- CGC Family ID: CGCFAM_02429
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3085_c_28 | Rep_3085_c_28_8 | 6831 | 8000 | - | GH25 |
| TC | Rep_3085_c_28 | Rep_3085_c_28_9 | 8340 | 9398 | + | 9.A.23.1.1 |
| pfam | Rep_3085_c_28 | Rep_3085_c_28_10 | 9729 | 11903 | + | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 |
| STP | Rep_3085_c_28 | Rep_3085_c_28_11 | 12011 | 12520 | - | NUDIX |
| CAZyme | Rep_3085_c_28 | Rep_3085_c_28_12 | 12694 | 13284 | - | CBM13 |
Gene ID: Rep_3085_c_28_8
Type: CAZyme
Location: 6831 - 8000 (-)
Type: CAZyme
Location: 6831 - 8000 (-)
Gene ID: Rep_3085_c_28_9
Type: TC
Location: 8340 - 9398 (+)
Type: TC
Location: 8340 - 9398 (+)
Gene ID: Rep_3085_c_28_10
Type: pfam
Location: 9729 - 11903 (+)
Type: pfam
Location: 9729 - 11903 (+)
Gene ID: Rep_3085_c_28_11
Type: STP
Location: 12011 - 12520 (-)
Type: STP
Location: 12011 - 12520 (-)
Gene ID: Rep_3085_c_28_12
Type: CAZyme
Location: 12694 - 13284 (-)
Type: CAZyme
Location: 12694 - 13284 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.