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Cluster: Rep_3085_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3085_c_27 Rep_3085_c_27_17 20360 22570 + CBM48 | GH13_9
pfam Rep_3085_c_27 Rep_3085_c_27_18 22670 23863 + NTP_transferase | Hexapep_GlmU
pfam Rep_3085_c_27 Rep_3085_c_27_19 23857 24984 + NTP_transferase | Hexapep_GlmU
CAZyme Rep_3085_c_27 Rep_3085_c_27_20 25136 26554 + GT5
pfam Rep_3085_c_27 Rep_3085_c_27_21 26871 27131 + ATPase_gene1
pfam Rep_3085_c_27 Rep_3085_c_27_22 27150 27650 + ATP-synt_I
TC Rep_3085_c_27 Rep_3085_c_27_23 27654 28397 + 3.A.2.1.5
TC Rep_3085_c_27 Rep_3085_c_27_24 28449 28730 + 3.A.2.1.2
pfam Rep_3085_c_27 Rep_3085_c_27_25 28769 29275 + ATP-synt_B
pfam Rep_3085_c_27 Rep_3085_c_27_26 29272 29811 + OSCP
TC Rep_3085_c_27 Rep_3085_c_27_27 29936 30526 + 3.A.2.1.5
Gene ID: Rep_3085_c_27_17
Type: CAZyme
Location: 20360 - 22570 (+)
Gene ID: Rep_3085_c_27_18
Type: pfam
Location: 22670 - 23863 (+)
Gene ID: Rep_3085_c_27_19
Type: pfam
Location: 23857 - 24984 (+)
Gene ID: Rep_3085_c_27_20
Type: CAZyme
Location: 25136 - 26554 (+)
Gene ID: Rep_3085_c_27_21
Type: pfam
Location: 26871 - 27131 (+)
Gene ID: Rep_3085_c_27_22
Type: pfam
Location: 27150 - 27650 (+)
Gene ID: Rep_3085_c_27_23
Type: TC
Location: 27654 - 28397 (+)
Gene ID: Rep_3085_c_27_24
Type: TC
Location: 28449 - 28730 (+)
Gene ID: Rep_3085_c_27_25
Type: pfam
Location: 28769 - 29275 (+)
Gene ID: Rep_3085_c_27_26
Type: pfam
Location: 29272 - 29811 (+)
Gene ID: Rep_3085_c_27_27
Type: TC
Location: 29936 - 30526 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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