Cluster: Rep_3085_CGC21
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3085
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3085_c_26 | Rep_3085_c_26_21 | 18636 | 19541 | - | GT2 |
| CAZyme | Rep_3085_c_26 | Rep_3085_c_26_22 | 19559 | 20431 | - | GT2 |
| TF | Rep_3085_c_26 | Rep_3085_c_26_23 | 20536 | 21255 | + | LytTR |
| CAZyme | Rep_3085_c_26 | Rep_3085_c_26_24 | 21313 | 22371 | - | GT2 |
| pfam | Rep_3085_c_26 | Rep_3085_c_26_25 | 22597 | 23247 | - | Hydrolase | HAD | HAD_2 |
| pfam | Rep_3085_c_26 | Rep_3085_c_26_26 | 23397 | 24581 | + | Patatin |
| TC | Rep_3085_c_26 | Rep_3085_c_26_27 | 24568 | 26175 | + | 8.A.7.1.5 |
Gene ID: Rep_3085_c_26_21
Type: CAZyme
Location: 18636 - 19541 (-)
Type: CAZyme
Location: 18636 - 19541 (-)
Gene ID: Rep_3085_c_26_22
Type: CAZyme
Location: 19559 - 20431 (-)
Type: CAZyme
Location: 19559 - 20431 (-)
Gene ID: Rep_3085_c_26_23
Type: TF
Location: 20536 - 21255 (+)
Type: TF
Location: 20536 - 21255 (+)
Gene ID: Rep_3085_c_26_24
Type: CAZyme
Location: 21313 - 22371 (-)
Type: CAZyme
Location: 21313 - 22371 (-)
Gene ID: Rep_3085_c_26_25
Type: pfam
Location: 22597 - 23247 (-)
Type: pfam
Location: 22597 - 23247 (-)
Gene ID: Rep_3085_c_26_26
Type: pfam
Location: 23397 - 24581 (+)
Type: pfam
Location: 23397 - 24581 (+)
Gene ID: Rep_3085_c_26_27
Type: TC
Location: 24568 - 26175 (+)
Type: TC
Location: 24568 - 26175 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3085_c_26_22 | vegan > omnivore | 1.01579 | 0.00861 |
| Rep_3085_c_26_22 | vegetarian > omnivore | 1.25884 | 0.01057 |
| Rep_3085_c_26_24 | vegan > omnivore | 1.11103 | 0.00861 |
| Rep_3085_c_26_24 | vegetarian > omnivore | 1.40165 | 0.01057 |