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Cluster: Rep_3085_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3085_c_21 Rep_3085_c_21_21 23213 24355 - 2.A.1.15.18
TC Rep_3085_c_21 Rep_3085_c_21_22 24615 25580 - 3.D.6.1.3
TC Rep_3085_c_21 Rep_3085_c_21_23 25596 26228 - 3.D.6.1.2
TC Rep_3085_c_21 Rep_3085_c_21_24 26230 26895 - 3.D.6.1.2
pfam Rep_3085_c_21 Rep_3085_c_21_25 26912 27463 - FMN_bind
TC Rep_3085_c_21 Rep_3085_c_21_26 27460 28419 - 3.D.6.1.2
TC Rep_3085_c_21 Rep_3085_c_21_27 28419 29741 - 3.D.6.1.2
NULL(UNKNOWN) Rep_3085_c_21 Rep_3085_c_21_28 30066 30191 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3085_c_21 Rep_3085_c_21_29 30343 30879 - DUF5662
CAZyme Rep_3085_c_21 Rep_3085_c_21_30 31029 32909 - GT2 | GT2
TC Rep_3085_c_21 Rep_3085_c_21_31 32911 33654 - 3.A.1.103.1
TC Rep_3085_c_21 Rep_3085_c_21_32 33668 34459 - 3.A.1.103.6
Gene ID: Rep_3085_c_21_21
Type: TC
Location: 23213 - 24355 (-)
Gene ID: Rep_3085_c_21_22
Type: TC
Location: 24615 - 25580 (-)
Gene ID: Rep_3085_c_21_23
Type: TC
Location: 25596 - 26228 (-)
Gene ID: Rep_3085_c_21_24
Type: TC
Location: 26230 - 26895 (-)
Gene ID: Rep_3085_c_21_25
Type: pfam
Location: 26912 - 27463 (-)
Gene ID: Rep_3085_c_21_26
Type: TC
Location: 27460 - 28419 (-)
Gene ID: Rep_3085_c_21_27
Type: TC
Location: 28419 - 29741 (-)
Gene ID: Rep_3085_c_21_28
Type:
Location: 30066 - 30191 (+)
Gene ID: Rep_3085_c_21_29
Type: pfam
Location: 30343 - 30879 (-)
Gene ID: Rep_3085_c_21_30
Type: CAZyme
Location: 31029 - 32909 (-)
Gene ID: Rep_3085_c_21_31
Type: TC
Location: 32911 - 33654 (-)
Gene ID: Rep_3085_c_21_32
Type: TC
Location: 33668 - 34459 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3085_c_21_28 vegetarian > omnivore 1.04571 0.01057

🧭 Explore Read Mapping of CGC

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