Cluster: Rep_3085_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3085
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3085_c_19 | Rep_3085_c_19_27 | 30873 | 31454 | - | 2.A.107.1.2 |
| CAZyme | Rep_3085_c_19 | Rep_3085_c_19_28 | 31752 | 32729 | - | GT2 |
| CAZyme | Rep_3085_c_19 | Rep_3085_c_19_29 | 32740 | 33738 | - | GT2 |
| CAZyme | Rep_3085_c_19 | Rep_3085_c_19_30 | 33735 | 34739 | - | GT2 |
Gene ID: Rep_3085_c_19_27
Type: TC
Location: 30873 - 31454 (-)
Type: TC
Location: 30873 - 31454 (-)
Gene ID: Rep_3085_c_19_28
Type: CAZyme
Location: 31752 - 32729 (-)
Type: CAZyme
Location: 31752 - 32729 (-)
Gene ID: Rep_3085_c_19_29
Type: CAZyme
Location: 32740 - 33738 (-)
Type: CAZyme
Location: 32740 - 33738 (-)
Gene ID: Rep_3085_c_19_30
Type: CAZyme
Location: 33735 - 34739 (-)
Type: CAZyme
Location: 33735 - 34739 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3085_c_19_29 | vegan > omnivore | 1.04769 | 0.00861 |
| Rep_3085_c_19_29 | vegetarian > omnivore | 1.11031 | 0.01057 |