Cluster: Rep_3085_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3085
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3085_c_18 | Rep_3085_c_18_7 | 6225 | 7373 | - | GH154 |
| CAZyme | Rep_3085_c_18 | Rep_3085_c_18_8 | 7578 | 8723 | + | GH130_1 |
| pfam | Rep_3085_c_18 | Rep_3085_c_18_9 | 8748 | 9410 | + | DUF624 |
| CAZyme | Rep_3085_c_18 | Rep_3085_c_18_10 | 9413 | 11452 | + | GH36 |
| TF | Rep_3085_c_18 | Rep_3085_c_18_11 | 11593 | 12255 | + | GntR |
| TC | Rep_3085_c_18 | Rep_3085_c_18_12 | 12470 | 13915 | + | 2.A.3.7.6 |
Gene ID: Rep_3085_c_18_7
Type: CAZyme
Location: 6225 - 7373 (-)
Type: CAZyme
Location: 6225 - 7373 (-)
Gene ID: Rep_3085_c_18_8
Type: CAZyme
Location: 7578 - 8723 (+)
Type: CAZyme
Location: 7578 - 8723 (+)
Gene ID: Rep_3085_c_18_9
Type: pfam
Location: 8748 - 9410 (+)
Type: pfam
Location: 8748 - 9410 (+)
Gene ID: Rep_3085_c_18_10
Type: CAZyme
Location: 9413 - 11452 (+)
Type: CAZyme
Location: 9413 - 11452 (+)
Gene ID: Rep_3085_c_18_11
Type: TF
Location: 11593 - 12255 (+)
Type: TF
Location: 11593 - 12255 (+)
Gene ID: Rep_3085_c_18_12
Type: TC
Location: 12470 - 13915 (+)
Type: TC
Location: 12470 - 13915 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.