Cluster: Rep_3085_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3085
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3085_c_17 | Rep_3085_c_17_19 | 20312 | 25027 | - | 3.A.7.17.1 |
| pfam | Rep_3085_c_17 | Rep_3085_c_17_20 | 25073 | 25756 | - | DZR | DZR | Zn_Ribbon_1 | Zn_Ribbon_1 | Zn_Ribbon_1 | Zn_ribbon_3 |
| pfam | Rep_3085_c_17 | Rep_3085_c_17_21 | 25782 | 28016 | - | Zn_Ribbon_1 |
| CAZyme | Rep_3085_c_17 | Rep_3085_c_17_22 | 28529 | 29656 | - | CE9 |
| TC | Rep_3085_c_17 | Rep_3085_c_17_23 | 29860 | 31323 | - | 4.A.1.1.7 |
Gene ID: Rep_3085_c_17_19
Type: TC
Location: 20312 - 25027 (-)
Type: TC
Location: 20312 - 25027 (-)
Gene ID: Rep_3085_c_17_20
Type: pfam
Location: 25073 - 25756 (-)
Type: pfam
Location: 25073 - 25756 (-)
Gene ID: Rep_3085_c_17_21
Type: pfam
Location: 25782 - 28016 (-)
Type: pfam
Location: 25782 - 28016 (-)
Gene ID: Rep_3085_c_17_22
Type: CAZyme
Location: 28529 - 29656 (-)
Type: CAZyme
Location: 28529 - 29656 (-)
Gene ID: Rep_3085_c_17_23
Type: TC
Location: 29860 - 31323 (-)
Type: TC
Location: 29860 - 31323 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3085_c_17_19 | vegan > omnivore | 1.07692 | 0.00861 |
| Rep_3085_c_17_19 | vegetarian > omnivore | 1.53096 | 0.01057 |
| Rep_3085_c_17_20 | vegan > omnivore | 1.30413 | 0.00861 |
| Rep_3085_c_17_20 | vegetarian > omnivore | 1.82347 | 0.01057 |
| Rep_3085_c_17_21 | vegan > omnivore | 1.07242 | 0.00861 |
| Rep_3085_c_17_21 | vegetarian > omnivore | 1.54723 | 0.01057 |