Cluster: Rep_3085_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3085
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3085_c_16 | Rep_3085_c_16_16 | 21944 | 23086 | - | GH105 |
| CAZyme | Rep_3085_c_16 | Rep_3085_c_16_17 | 23091 | 24647 | - | GH28 |
| TF | Rep_3085_c_16 | Rep_3085_c_16_18 | 24728 | 25549 | + | HTH_AraC | HTH_AraC |
| TC | Rep_3085_c_16 | Rep_3085_c_16_19 | 25805 | 26662 | - | 3.A.1.1.11 |
| TC | Rep_3085_c_16 | Rep_3085_c_16_20 | 26673 | 27602 | - | 3.A.1.1.11 |
Gene ID: Rep_3085_c_16_16
Type: CAZyme
Location: 21944 - 23086 (-)
Type: CAZyme
Location: 21944 - 23086 (-)
Gene ID: Rep_3085_c_16_17
Type: CAZyme
Location: 23091 - 24647 (-)
Type: CAZyme
Location: 23091 - 24647 (-)
Gene ID: Rep_3085_c_16_18
Type: TF
Location: 24728 - 25549 (+)
Type: TF
Location: 24728 - 25549 (+)
Gene ID: Rep_3085_c_16_19
Type: TC
Location: 25805 - 26662 (-)
Type: TC
Location: 25805 - 26662 (-)
Gene ID: Rep_3085_c_16_20
Type: TC
Location: 26673 - 27602 (-)
Type: TC
Location: 26673 - 27602 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.