Cluster: Rep_3085_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3085
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3085_c_12 | Rep_3085_c_12_3 | 2428 | 3000 | - | 2.A.88.3.1 |
| pfam | Rep_3085_c_12 | Rep_3085_c_12_4 | 3298 | 3546 | + | SpoIIID |
| TF | Rep_3085_c_12 | Rep_3085_c_12_5 | 3808 | 4665 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_3085_c_12 | Rep_3085_c_12_6 | 4806 | 7067 | + | GT35 |
Gene ID: Rep_3085_c_12_3
Type: TC
Location: 2428 - 3000 (-)
Type: TC
Location: 2428 - 3000 (-)
Gene ID: Rep_3085_c_12_4
Type: pfam
Location: 3298 - 3546 (+)
Type: pfam
Location: 3298 - 3546 (+)
Gene ID: Rep_3085_c_12_5
Type: TF
Location: 3808 - 4665 (-)
Type: TF
Location: 3808 - 4665 (-)
Gene ID: Rep_3085_c_12_6
Type: CAZyme
Location: 4806 - 7067 (+)
Type: CAZyme
Location: 4806 - 7067 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.