Cluster: Rep_3085_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3085
- CGC Family ID: CGCFAM_00137
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3085_c_9 | Rep_3085_c_9_49 | 60837 | 61838 | - | GT2 |
| pfam | Rep_3085_c_9 | Rep_3085_c_9_50 | 61943 | 62500 | - | DUF4358 |
| TF | Rep_3085_c_9 | Rep_3085_c_9_51 | 62652 | 63092 | - | MarR |
| TC | Rep_3085_c_9 | Rep_3085_c_9_52 | 63817 | 65217 | - | 2.A.66.1.32 |
Gene ID: Rep_3085_c_9_49
Type: CAZyme
Location: 60837 - 61838 (-)
Type: CAZyme
Location: 60837 - 61838 (-)
Gene ID: Rep_3085_c_9_50
Type: pfam
Location: 61943 - 62500 (-)
Type: pfam
Location: 61943 - 62500 (-)
Gene ID: Rep_3085_c_9_51
Type: TF
Location: 62652 - 63092 (-)
Type: TF
Location: 62652 - 63092 (-)
Gene ID: Rep_3085_c_9_52
Type: TC
Location: 63817 - 65217 (-)
Type: TC
Location: 63817 - 65217 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3085_c_9_52 | vegetarian > omnivore | 1.30594 | 0.01057 |