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Cluster: Rep_3085_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3085_c_0 Rep_3085_c_0_138 148166 149143 - 3.A.1.1.48
TC Rep_3085_c_0 Rep_3085_c_0_139 149159 150073 - 3.A.1.1.36
STP Rep_3085_c_0 Rep_3085_c_0_140 150187 151548 - SBP_bac_1
TF Rep_3085_c_0 Rep_3085_c_0_141 152014 152859 + HTH_6
TC Rep_3085_c_0 Rep_3085_c_0_142 153390 155300 + 8.A.59.4.2
pfam Rep_3085_c_0 Rep_3085_c_0_143 155465 156511 + SpoIID
CAZyme Rep_3085_c_0 Rep_3085_c_0_144 156638 159052 + GT2 | GT2
CAZyme Rep_3085_c_0 Rep_3085_c_0_145 159134 159925 + GT2
Gene ID: Rep_3085_c_0_138
Type: TC
Location: 148166 - 149143 (-)
Gene ID: Rep_3085_c_0_139
Type: TC
Location: 149159 - 150073 (-)
Gene ID: Rep_3085_c_0_140
Type: STP
Location: 150187 - 151548 (-)
Gene ID: Rep_3085_c_0_141
Type: TF
Location: 152014 - 152859 (+)
Gene ID: Rep_3085_c_0_142
Type: TC
Location: 153390 - 155300 (+)
Gene ID: Rep_3085_c_0_143
Type: pfam
Location: 155465 - 156511 (+)
Gene ID: Rep_3085_c_0_144
Type: CAZyme
Location: 156638 - 159052 (+)
Gene ID: Rep_3085_c_0_145
Type: CAZyme
Location: 159134 - 159925 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3085_c_0_142 vegan > omnivore 1.12086 0.00861
Rep_3085_c_0_142 vegetarian > omnivore 1.38781 0.01057

🧭 Explore Read Mapping of CGC

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