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Cluster: Rep_3050_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3050_c_0 Rep_3050_c_0_315 372644 373990 + 3.A.1.4.10
pfam Rep_3050_c_0 Rep_3050_c_0_316 374157 375023 + BPD_transp_2
pfam Rep_3050_c_0 Rep_3050_c_0_317 375025 376002 + BPD_transp_2
TC Rep_3050_c_0 Rep_3050_c_0_318 375999 376751 + 3.A.1.4.10
TC Rep_3050_c_0 Rep_3050_c_0_319 376748 377461 + 3.A.1.4.10
TC Rep_3050_c_0 Rep_3050_c_0_320 377458 378858 + 2.A.66.1.41
pfam Rep_3050_c_0 Rep_3050_c_0_321 378996 379973 + PEP_mutase
TF Rep_3050_c_0 Rep_3050_c_0_322 380185 381180 + LacI
TC Rep_3050_c_0 Rep_3050_c_0_323 381392 382804 + 2.A.66.1.32
NULL(UNKNOWN) Rep_3050_c_0 Rep_3050_c_0_324 382880 383725 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3050_c_0 Rep_3050_c_0_325 383712 386051 - GH65
STP Rep_3050_c_0 Rep_3050_c_0_326 386064 386918 - PIG-L
TC Rep_3050_c_0 Rep_3050_c_0_327 386925 387764 - 3.A.1.1.45
TC Rep_3050_c_0 Rep_3050_c_0_328 387761 388666 - 3.A.1.1.42
STP Rep_3050_c_0 Rep_3050_c_0_329 388742 390043 - SBP_bac_1
TC Rep_3050_c_0 Rep_3050_c_0_330 390190 391920 - 9.B.33.1.1
TF Rep_3050_c_0 Rep_3050_c_0_331 391904 393421 - HTH_AraC
peptidase Rep_3050_c_0 Rep_3050_c_0_332 393640 395088 - C69.001
TC Rep_3050_c_0 Rep_3050_c_0_333 395380 395928 + 3.A.1.29.1
TC Rep_3050_c_0 Rep_3050_c_0_334 395993 396364 + 3.A.1.29.1
TC Rep_3050_c_0 Rep_3050_c_0_335 396361 397713 + 3.A.1.29.1
TC Rep_3050_c_0 Rep_3050_c_0_336 397703 398533 + 3.A.1.29.1
NULL(UNKNOWN) Rep_3050_c_0 Rep_3050_c_0_337 398630 399688 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3050_c_0 Rep_3050_c_0_338 399685 400713 - 3.A.1.11.1
Gene ID: Rep_3050_c_0_315
Type: TC
Location: 372644 - 373990 (+)
Gene ID: Rep_3050_c_0_316
Type: pfam
Location: 374157 - 375023 (+)
Gene ID: Rep_3050_c_0_317
Type: pfam
Location: 375025 - 376002 (+)
Gene ID: Rep_3050_c_0_318
Type: TC
Location: 375999 - 376751 (+)
Gene ID: Rep_3050_c_0_319
Type: TC
Location: 376748 - 377461 (+)
Gene ID: Rep_3050_c_0_320
Type: TC
Location: 377458 - 378858 (+)
Gene ID: Rep_3050_c_0_321
Type: pfam
Location: 378996 - 379973 (+)
Gene ID: Rep_3050_c_0_322
Type: TF
Location: 380185 - 381180 (+)
Gene ID: Rep_3050_c_0_323
Type: TC
Location: 381392 - 382804 (+)
Gene ID: Rep_3050_c_0_324
Type:
Location: 382880 - 383725 (-)
Gene ID: Rep_3050_c_0_325
Type: CAZyme
Location: 383712 - 386051 (-)
Gene ID: Rep_3050_c_0_326
Type: STP
Location: 386064 - 386918 (-)
Gene ID: Rep_3050_c_0_327
Type: TC
Location: 386925 - 387764 (-)
Gene ID: Rep_3050_c_0_328
Type: TC
Location: 387761 - 388666 (-)
Gene ID: Rep_3050_c_0_329
Type: STP
Location: 388742 - 390043 (-)
Gene ID: Rep_3050_c_0_330
Type: TC
Location: 390190 - 391920 (-)
Gene ID: Rep_3050_c_0_331
Type: TF
Location: 391904 - 393421 (-)
Gene ID: Rep_3050_c_0_332
Type: peptidase
Location: 393640 - 395088 (-)
Gene ID: Rep_3050_c_0_333
Type: TC
Location: 395380 - 395928 (+)
Gene ID: Rep_3050_c_0_334
Type: TC
Location: 395993 - 396364 (+)
Gene ID: Rep_3050_c_0_335
Type: TC
Location: 396361 - 397713 (+)
Gene ID: Rep_3050_c_0_336
Type: TC
Location: 397703 - 398533 (+)
Gene ID: Rep_3050_c_0_337
Type:
Location: 398630 - 399688 (-)
Gene ID: Rep_3050_c_0_338
Type: TC
Location: 399685 - 400713 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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