Cluster: Rep_3050_CGC39
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3050
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3050_c_1 | Rep_3050_c_1_1679 | 1870545 | 1871597 | + | 9.B.18.2.1 |
| pfam | Rep_3050_c_1 | Rep_3050_c_1_1680 | 1871594 | 1872793 | + | Epimerase | Polysacc_synt_C |
| pfam | Rep_3050_c_1 | Rep_3050_c_1_1681 | 1873011 | 1874150 | + | Epimerase_2 |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_1682 | 1874169 | 1875386 | + | GT4 |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_1683 | 1875408 | 1876127 | + | GT2 |
| pfam | Rep_3050_c_1 | Rep_3050_c_1_1684 | 1876124 | 1876480 | + | DUF2304 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_1685 | 1876527 | 1878029 | + | 2.A.50.2.1 |
Gene ID: Rep_3050_c_1_1679
Type: TC
Location: 1870545 - 1871597 (+)
Type: TC
Location: 1870545 - 1871597 (+)
Gene ID: Rep_3050_c_1_1680
Type: pfam
Location: 1871594 - 1872793 (+)
Type: pfam
Location: 1871594 - 1872793 (+)
Gene ID: Rep_3050_c_1_1681
Type: pfam
Location: 1873011 - 1874150 (+)
Type: pfam
Location: 1873011 - 1874150 (+)
Gene ID: Rep_3050_c_1_1682
Type: CAZyme
Location: 1874169 - 1875386 (+)
Type: CAZyme
Location: 1874169 - 1875386 (+)
Gene ID: Rep_3050_c_1_1683
Type: CAZyme
Location: 1875408 - 1876127 (+)
Type: CAZyme
Location: 1875408 - 1876127 (+)
Gene ID: Rep_3050_c_1_1684
Type: pfam
Location: 1876124 - 1876480 (+)
Type: pfam
Location: 1876124 - 1876480 (+)
Gene ID: Rep_3050_c_1_1685
Type: TC
Location: 1876527 - 1878029 (+)
Type: TC
Location: 1876527 - 1878029 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.