Cluster: Rep_3050_CGC38
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3050
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_1593 | 1776557 | 1777615 | - | GT4 |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_1594 | 1777627 | 1778850 | - | GH3 |
| pfam | Rep_3050_c_1 | Rep_3050_c_1_1595 | 1778981 | 1779982 | - | DUF4340 | DUF4340 |
| pfam | Rep_3050_c_1 | Rep_3050_c_1_1596 | 1779992 | 1781413 | - | ABC_transp_aux |
| TC | Rep_3050_c_1 | Rep_3050_c_1_1597 | 1781427 | 1782290 | - | 3.A.1.132.1 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_1598 | 1782291 | 1783274 | - | 3.A.1.132.4 |
Gene ID: Rep_3050_c_1_1593
Type: CAZyme
Location: 1776557 - 1777615 (-)
Type: CAZyme
Location: 1776557 - 1777615 (-)
Gene ID: Rep_3050_c_1_1594
Type: CAZyme
Location: 1777627 - 1778850 (-)
Type: CAZyme
Location: 1777627 - 1778850 (-)
Gene ID: Rep_3050_c_1_1595
Type: pfam
Location: 1778981 - 1779982 (-)
Type: pfam
Location: 1778981 - 1779982 (-)
Gene ID: Rep_3050_c_1_1596
Type: pfam
Location: 1779992 - 1781413 (-)
Type: pfam
Location: 1779992 - 1781413 (-)
Gene ID: Rep_3050_c_1_1597
Type: TC
Location: 1781427 - 1782290 (-)
Type: TC
Location: 1781427 - 1782290 (-)
Gene ID: Rep_3050_c_1_1598
Type: TC
Location: 1782291 - 1783274 (-)
Type: TC
Location: 1782291 - 1783274 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.