Cluster: Rep_3050_CGC34
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3050
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_1402 | 1560206 | 1561174 | - | GH179 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_1403 | 1561229 | 1562191 | - | 3.A.1.2.1 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_1404 | 1562184 | 1563707 | - | 3.A.1.2.20 |
Gene ID: Rep_3050_c_1_1402
Type: CAZyme
Location: 1560206 - 1561174 (-)
Type: CAZyme
Location: 1560206 - 1561174 (-)
Gene ID: Rep_3050_c_1_1403
Type: TC
Location: 1561229 - 1562191 (-)
Type: TC
Location: 1561229 - 1562191 (-)
Gene ID: Rep_3050_c_1_1404
Type: TC
Location: 1562184 - 1563707 (-)
Type: TC
Location: 1562184 - 1563707 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3050_c_1_1402 | vegan > omnivore | 1.57567 | 0.00861 |
| Rep_3050_c_1_1403 | vegan > omnivore | 2.07682 | 0.00861 |
| Rep_3050_c_1_1404 | vegan > omnivore | 2.09601 | 0.00861 |