Cluster: Rep_3050_CGC32
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3050
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3050_c_1 | Rep_3050_c_1_1140 | 1293290 | 1294183 | + | 3.A.1.1.20 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_1141 | 1294199 | 1295056 | + | 3.A.1.1.18 |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_1142 | 1295105 | 1297276 | + | GH112 |
Gene ID: Rep_3050_c_1_1140
Type: TC
Location: 1293290 - 1294183 (+)
Type: TC
Location: 1293290 - 1294183 (+)
Gene ID: Rep_3050_c_1_1141
Type: TC
Location: 1294199 - 1295056 (+)
Type: TC
Location: 1294199 - 1295056 (+)
Gene ID: Rep_3050_c_1_1142
Type: CAZyme
Location: 1295105 - 1297276 (+)
Type: CAZyme
Location: 1295105 - 1297276 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3050_c_1_1140 | vegan > omnivore | 1.64832 | 0.00861 |
| Rep_3050_c_1_1140 | vegetarian > omnivore | 2.14634 | 0.01557 |
| Rep_3050_c_1_1141 | vegan > omnivore | 1.69163 | 0.00861 |
| Rep_3050_c_1_1141 | vegetarian > omnivore | 2.23733 | 0.01557 |