Cluster: Rep_3050_CGC29
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3050
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3050_c_1 | Rep_3050_c_1_976 | 1109420 | 1110331 | + | 3.A.1.1.4 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_977 | 1110324 | 1111187 | + | 3.A.1.1.34 |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_978 | 1111200 | 1112540 | + | GH30_2 |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_979 | 1112553 | 1113911 | + | GH30_1 |
Gene ID: Rep_3050_c_1_976
Type: TC
Location: 1109420 - 1110331 (+)
Type: TC
Location: 1109420 - 1110331 (+)
Gene ID: Rep_3050_c_1_977
Type: TC
Location: 1110324 - 1111187 (+)
Type: TC
Location: 1110324 - 1111187 (+)
Gene ID: Rep_3050_c_1_978
Type: CAZyme
Location: 1111200 - 1112540 (+)
Type: CAZyme
Location: 1111200 - 1112540 (+)
Gene ID: Rep_3050_c_1_979
Type: CAZyme
Location: 1112553 - 1113911 (+)
Type: CAZyme
Location: 1112553 - 1113911 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3050_c_1_976 | vegan > omnivore | 1.27474 | 0.00861 |