Cluster: Rep_3050_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3050
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3050_c_1 | Rep_3050_c_1_947 | 1084814 | 1086178 | + | 2.A.38.1.1 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_948 | 1086189 | 1087661 | + | 2.A.38.1.1 |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_949 | 1087892 | 1088608 | + | CE4 |
| NULL(UNKNOWN) | Rep_3050_c_1 | Rep_3050_c_1_950 | 1088675 | 1089214 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_951 | 1089359 | 1090681 | + | GH13_20 |
Gene ID: Rep_3050_c_1_947
Type: TC
Location: 1084814 - 1086178 (+)
Type: TC
Location: 1084814 - 1086178 (+)
Gene ID: Rep_3050_c_1_948
Type: TC
Location: 1086189 - 1087661 (+)
Type: TC
Location: 1086189 - 1087661 (+)
Gene ID: Rep_3050_c_1_949
Type: CAZyme
Location: 1087892 - 1088608 (+)
Type: CAZyme
Location: 1087892 - 1088608 (+)
Gene ID: Rep_3050_c_1_950
Type:
Location: 1088675 - 1089214 (+)
Type:
Location: 1088675 - 1089214 (+)
Gene ID: Rep_3050_c_1_951
Type: CAZyme
Location: 1089359 - 1090681 (+)
Type: CAZyme
Location: 1089359 - 1090681 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.