Cluster: Rep_3050_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3050
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3050_c_1 | Rep_3050_c_1_252 | 285856 | 286431 | + | 4.F.1.1.7 |
| NULL(UNKNOWN) | Rep_3050_c_1 | Rep_3050_c_1_253 | 286516 | 288459 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3050_c_1 | Rep_3050_c_1_254 | 288693 | 290090 | + | tRNA-synt_1e | DALR_2 | tRNA-synt_1g | tRNA-synt_1g | CysS_C |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_255 | 290111 | 293065 | + | GT39 |
Gene ID: Rep_3050_c_1_252
Type: TC
Location: 285856 - 286431 (+)
Type: TC
Location: 285856 - 286431 (+)
Gene ID: Rep_3050_c_1_253
Type:
Location: 286516 - 288459 (+)
Type:
Location: 286516 - 288459 (+)
Gene ID: Rep_3050_c_1_254
Type: pfam
Location: 288693 - 290090 (+)
Type: pfam
Location: 288693 - 290090 (+)
Gene ID: Rep_3050_c_1_255
Type: CAZyme
Location: 290111 - 293065 (+)
Type: CAZyme
Location: 290111 - 293065 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.