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Cluster: Rep_3050_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3050_c_1 Rep_3050_c_1_38 43412 44827 + 4.A.1.2.13
CAZyme Rep_3050_c_1 Rep_3050_c_1_39 44857 46500 + GH13_29
peptidase Rep_3050_c_1 Rep_3050_c_1_40 46664 47587 + S09.UNB
NULL(UNKNOWN) Rep_3050_c_1 Rep_3050_c_1_41 47673 47768 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3050_c_1 Rep_3050_c_1_42 47840 49030 - 3.B.1.1.3
pfam Rep_3050_c_1 Rep_3050_c_1_43 49043 49456 - OAD_gamma
TC Rep_3050_c_1 Rep_3050_c_1_44 49899 51614 + 1.A.11.2.7
Gene ID: Rep_3050_c_1_38
Type: TC
Location: 43412 - 44827 (+)
Gene ID: Rep_3050_c_1_39
Type: CAZyme
Location: 44857 - 46500 (+)
Gene ID: Rep_3050_c_1_40
Type: peptidase
Location: 46664 - 47587 (+)
Gene ID: Rep_3050_c_1_41
Type:
Location: 47673 - 47768 (+)
Gene ID: Rep_3050_c_1_42
Type: TC
Location: 47840 - 49030 (-)
Gene ID: Rep_3050_c_1_43
Type: pfam
Location: 49043 - 49456 (-)
Gene ID: Rep_3050_c_1_44
Type: TC
Location: 49899 - 51614 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3050_c_1_43 vegetarian > omnivore 1.11408 0.01557

🧭 Explore Read Mapping of CGC

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