dbCAN Logo

Cluster: Rep_3050_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3050_c_0 Rep_3050_c_0_692 767502 768500 + 3.A.1.24.1
TC Rep_3050_c_0 Rep_3050_c_0_693 768500 769198 + 3.A.1.24.5
STP Rep_3050_c_0 Rep_3050_c_0_694 769306 770358 - Aminotran_1_2
TC Rep_3050_c_0 Rep_3050_c_0_695 770506 771870 + 2.A.22.5.3
STP Rep_3050_c_0 Rep_3050_c_0_696 772284 773057 - HD
STP Rep_3050_c_0 Rep_3050_c_0_697 773235 773804 + TetR_N
TC Rep_3050_c_0 Rep_3050_c_0_698 773946 774461 + 4.A.1.2.5
NULL(UNKNOWN) Rep_3050_c_0 Rep_3050_c_0_699 774551 775132 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3050_c_0 Rep_3050_c_0_700 775221 775859 + LacAB_rpiB | DUF3666
TC Rep_3050_c_0 Rep_3050_c_0_701 776338 777702 + 1.A.26.1.2
CAZyme Rep_3050_c_0 Rep_3050_c_0_702 778072 779847 + GH13_9
Gene ID: Rep_3050_c_0_692
Type: TC
Location: 767502 - 768500 (+)
Gene ID: Rep_3050_c_0_693
Type: TC
Location: 768500 - 769198 (+)
Gene ID: Rep_3050_c_0_694
Type: STP
Location: 769306 - 770358 (-)
Gene ID: Rep_3050_c_0_695
Type: TC
Location: 770506 - 771870 (+)
Gene ID: Rep_3050_c_0_696
Type: STP
Location: 772284 - 773057 (-)
Gene ID: Rep_3050_c_0_697
Type: STP
Location: 773235 - 773804 (+)
Gene ID: Rep_3050_c_0_698
Type: TC
Location: 773946 - 774461 (+)
Gene ID: Rep_3050_c_0_699
Type:
Location: 774551 - 775132 (+)
Gene ID: Rep_3050_c_0_700
Type: pfam
Location: 775221 - 775859 (+)
Gene ID: Rep_3050_c_0_701
Type: TC
Location: 776338 - 777702 (+)
Gene ID: Rep_3050_c_0_702
Type: CAZyme
Location: 778072 - 779847 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List