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Cluster: Rep_3006_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3006_c_27 Rep_3006_c_27_24 28033 28950 + 3.A.1.1.10
TC Rep_3006_c_27 Rep_3006_c_27_25 28944 29825 + 3.A.1.1.29
STP Rep_3006_c_27 Rep_3006_c_27_26 29886 31481 + SBP_bac_1
TC Rep_3006_c_27 Rep_3006_c_27_27 31664 32596 + 3.A.1.1.29
NULL(UNKNOWN) Rep_3006_c_27 Rep_3006_c_27_28 32639 34243 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3006_c_27 Rep_3006_c_27_29 34358 35230 + 3.A.1.1.29
CAZyme Rep_3006_c_27 Rep_3006_c_27_30 35259 37790 + GH2
pfam Rep_3006_c_27 Rep_3006_c_27_31 37808 38449 + Aldolase
pfam Rep_3006_c_27 Rep_3006_c_27_32 38451 39401 + 2-Hacid_dh | 2-Hacid_dh_C
TC Rep_3006_c_27 Rep_3006_c_27_33 39825 40568 - 9.B.198.1.4
Gene ID: Rep_3006_c_27_24
Type: TC
Location: 28033 - 28950 (+)
Gene ID: Rep_3006_c_27_25
Type: TC
Location: 28944 - 29825 (+)
Gene ID: Rep_3006_c_27_26
Type: STP
Location: 29886 - 31481 (+)
Gene ID: Rep_3006_c_27_27
Type: TC
Location: 31664 - 32596 (+)
Gene ID: Rep_3006_c_27_28
Type:
Location: 32639 - 34243 (+)
Gene ID: Rep_3006_c_27_29
Type: TC
Location: 34358 - 35230 (+)
Gene ID: Rep_3006_c_27_30
Type: CAZyme
Location: 35259 - 37790 (+)
Gene ID: Rep_3006_c_27_31
Type: pfam
Location: 37808 - 38449 (+)
Gene ID: Rep_3006_c_27_32
Type: pfam
Location: 38451 - 39401 (+)
Gene ID: Rep_3006_c_27_33
Type: TC
Location: 39825 - 40568 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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