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Cluster: Rep_3006_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3006_c_16 Rep_3006_c_16_2 1670 3427 - 3.A.1.106.3
TC Rep_3006_c_16 Rep_3006_c_16_3 3466 4842 - 2.A.66.1.45
CAZyme Rep_3006_c_16 Rep_3006_c_16_4 5041 7437 - GH38
CAZyme Rep_3006_c_16 Rep_3006_c_16_5 7434 9752 - CBM67 | GH78
NULL(UNKNOWN) Rep_3006_c_16 Rep_3006_c_16_6 9756 10709 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_3006_c_16 Rep_3006_c_16_7 10706 12952 - HTH_AraC | HTH_AraC
TC Rep_3006_c_16 Rep_3006_c_16_8 13044 14690 - 3.A.1.1.10
TC Rep_3006_c_16 Rep_3006_c_16_9 14815 15702 - 3.A.1.1.10
TC Rep_3006_c_16 Rep_3006_c_16_10 15717 16640 - 3.A.1.1.10
Gene ID: Rep_3006_c_16_2
Type: TC
Location: 1670 - 3427 (-)
Gene ID: Rep_3006_c_16_3
Type: TC
Location: 3466 - 4842 (-)
Gene ID: Rep_3006_c_16_4
Type: CAZyme
Location: 5041 - 7437 (-)
Gene ID: Rep_3006_c_16_5
Type: CAZyme
Location: 7434 - 9752 (-)
Gene ID: Rep_3006_c_16_6
Type:
Location: 9756 - 10709 (-)
Gene ID: Rep_3006_c_16_7
Type: TF
Location: 10706 - 12952 (-)
Gene ID: Rep_3006_c_16_8
Type: TC
Location: 13044 - 14690 (-)
Gene ID: Rep_3006_c_16_9
Type: TC
Location: 14815 - 15702 (-)
Gene ID: Rep_3006_c_16_10
Type: TC
Location: 15717 - 16640 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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