Cluster: Rep_3006_CGC18
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3006
- CGC Family ID: CGCFAM_11267
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3006_c_13 | Rep_3006_c_13_7 | 6588 | 8414 | + | 3.A.1.111.2 |
| TC | Rep_3006_c_13 | Rep_3006_c_13_8 | 8411 | 10243 | + | 3.A.1.111.2 |
| NULL(UNKNOWN) | Rep_3006_c_13 | Rep_3006_c_13_9 | 10319 | 11968 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_3006_c_13 | Rep_3006_c_13_10 | 12027 | 12272 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3006_c_13 | Rep_3006_c_13_11 | 12230 | 12910 | - | 3.A.1.1.29 |
| TC | Rep_3006_c_13 | Rep_3006_c_13_12 | 12912 | 13868 | - | 3.A.1.1.10 |
| CAZyme | Rep_3006_c_13 | Rep_3006_c_13_13 | 14114 | 15625 | + | GH51_1 |
| pfam | Rep_3006_c_13 | Rep_3006_c_13_14 | 15751 | 16203 | - | HSP20 |
| CAZyme | Rep_3006_c_13 | Rep_3006_c_13_15 | 16519 | 19161 | + | CBM67 | GH78 |
| pfam | Rep_3006_c_13 | Rep_3006_c_13_16 | 19308 | 20087 | + | Ubie_methyltran | NodS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| peptidase | Rep_3006_c_13 | Rep_3006_c_13_17 | 20132 | 20890 | - | S09.946 |
| TC | Rep_3006_c_13 | Rep_3006_c_13_18 | 20910 | 21566 | - | 2.A.38.4.4 |
| TC | Rep_3006_c_13 | Rep_3006_c_13_19 | 21579 | 22475 | - | 3.A.5.1.1 |
Gene ID: Rep_3006_c_13_7
Type: TC
Location: 6588 - 8414 (+)
Type: TC
Location: 6588 - 8414 (+)
Gene ID: Rep_3006_c_13_8
Type: TC
Location: 8411 - 10243 (+)
Type: TC
Location: 8411 - 10243 (+)
Gene ID: Rep_3006_c_13_9
Type:
Location: 10319 - 11968 (-)
Type:
Location: 10319 - 11968 (-)
Gene ID: Rep_3006_c_13_10
Type:
Location: 12027 - 12272 (-)
Type:
Location: 12027 - 12272 (-)
Gene ID: Rep_3006_c_13_11
Type: TC
Location: 12230 - 12910 (-)
Type: TC
Location: 12230 - 12910 (-)
Gene ID: Rep_3006_c_13_12
Type: TC
Location: 12912 - 13868 (-)
Type: TC
Location: 12912 - 13868 (-)
Gene ID: Rep_3006_c_13_13
Type: CAZyme
Location: 14114 - 15625 (+)
Type: CAZyme
Location: 14114 - 15625 (+)
Gene ID: Rep_3006_c_13_14
Type: pfam
Location: 15751 - 16203 (-)
Type: pfam
Location: 15751 - 16203 (-)
Gene ID: Rep_3006_c_13_15
Type: CAZyme
Location: 16519 - 19161 (+)
Type: CAZyme
Location: 16519 - 19161 (+)
Gene ID: Rep_3006_c_13_16
Type: pfam
Location: 19308 - 20087 (+)
Type: pfam
Location: 19308 - 20087 (+)
Gene ID: Rep_3006_c_13_17
Type: peptidase
Location: 20132 - 20890 (-)
Type: peptidase
Location: 20132 - 20890 (-)
Gene ID: Rep_3006_c_13_18
Type: TC
Location: 20910 - 21566 (-)
Type: TC
Location: 20910 - 21566 (-)
Gene ID: Rep_3006_c_13_19
Type: TC
Location: 21579 - 22475 (-)
Type: TC
Location: 21579 - 22475 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Alectryocaccomicrobium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.