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Cluster: Rep_3005_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3005_c_18 Rep_3005_c_18_1 306 1805 - GH51_1
TC Rep_3005_c_18 Rep_3005_c_18_2 2019 3794 + 8.A.59.2.1
TF Rep_3005_c_18 Rep_3005_c_18_3 3743 4792 - HTH_AraC | HTH_AraC
TC Rep_3005_c_18 Rep_3005_c_18_4 5038 5994 + 3.A.1.1.10
TC Rep_3005_c_18 Rep_3005_c_18_5 5996 6892 + 3.A.1.1.29
NULL(UNKNOWN) Rep_3005_c_18 Rep_3005_c_18_6 6951 8600 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3005_c_18 Rep_3005_c_18_7 8676 10508 - 3.A.1.111.2
TC Rep_3005_c_18 Rep_3005_c_18_8 10505 12334 - 3.A.1.111.2
Gene ID: Rep_3005_c_18_1
Type: CAZyme
Location: 306 - 1805 (-)
Gene ID: Rep_3005_c_18_2
Type: TC
Location: 2019 - 3794 (+)
Gene ID: Rep_3005_c_18_3
Type: TF
Location: 3743 - 4792 (-)
Gene ID: Rep_3005_c_18_4
Type: TC
Location: 5038 - 5994 (+)
Gene ID: Rep_3005_c_18_5
Type: TC
Location: 5996 - 6892 (+)
Gene ID: Rep_3005_c_18_6
Type:
Location: 6951 - 8600 (+)
Gene ID: Rep_3005_c_18_7
Type: TC
Location: 8676 - 10508 (-)
Gene ID: Rep_3005_c_18_8
Type: TC
Location: 10505 - 12334 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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