Cluster: Rep_3001_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3001
- CGC Family ID: CGCFAM_11228
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3001_c_7 | Rep_3001_c_7_66 | 65778 | 68891 | - | GH106 |
| STP | Rep_3001_c_7 | Rep_3001_c_7_67 | 68953 | 69615 | - | Pribosyltran |
| pfam | Rep_3001_c_7 | Rep_3001_c_7_68 | 69730 | 70275 | - | Acetyltransf_1 | Acetyltransf_3 |
| TC | Rep_3001_c_7 | Rep_3001_c_7_69 | 70436 | 71851 | + | 2.A.66.1.33 |
| TC | Rep_3001_c_7 | Rep_3001_c_7_70 | 71929 | 73197 | - | 3.A.1.122.2 |
| TC | Rep_3001_c_7 | Rep_3001_c_7_71 | 73194 | 73913 | - | 3.A.1.122.2 |
| pfam | Rep_3001_c_7 | Rep_3001_c_7_72 | 73934 | 75610 | - | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | Rep_3001_c_7 | Rep_3001_c_7_73 | 75867 | 77606 | - | 3.D.1.5.1 |
| TC | Rep_3001_c_7 | Rep_3001_c_7_74 | 77627 | 79423 | - | 3.D.1.5.1 |
| NULL(UNKNOWN) | Rep_3001_c_7 | Rep_3001_c_7_75 | 79476 | 79853 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | Rep_3001_c_7 | Rep_3001_c_7_76 | 79857 | 80405 | - | HATPase_c |
| TC | Rep_3001_c_7 | Rep_3001_c_7_77 | 80445 | 80921 | - | 3.D.1.5.1 |
Gene ID: Rep_3001_c_7_66
Type: CAZyme
Location: 65778 - 68891 (-)
Type: CAZyme
Location: 65778 - 68891 (-)
Gene ID: Rep_3001_c_7_67
Type: STP
Location: 68953 - 69615 (-)
Type: STP
Location: 68953 - 69615 (-)
Gene ID: Rep_3001_c_7_68
Type: pfam
Location: 69730 - 70275 (-)
Type: pfam
Location: 69730 - 70275 (-)
Gene ID: Rep_3001_c_7_69
Type: TC
Location: 70436 - 71851 (+)
Type: TC
Location: 70436 - 71851 (+)
Gene ID: Rep_3001_c_7_70
Type: TC
Location: 71929 - 73197 (-)
Type: TC
Location: 71929 - 73197 (-)
Gene ID: Rep_3001_c_7_71
Type: TC
Location: 73194 - 73913 (-)
Type: TC
Location: 73194 - 73913 (-)
Gene ID: Rep_3001_c_7_72
Type: pfam
Location: 73934 - 75610 (-)
Type: pfam
Location: 73934 - 75610 (-)
Gene ID: Rep_3001_c_7_73
Type: TC
Location: 75867 - 77606 (-)
Type: TC
Location: 75867 - 77606 (-)
Gene ID: Rep_3001_c_7_74
Type: TC
Location: 77627 - 79423 (-)
Type: TC
Location: 77627 - 79423 (-)
Gene ID: Rep_3001_c_7_75
Type:
Location: 79476 - 79853 (-)
Type:
Location: 79476 - 79853 (-)
Gene ID: Rep_3001_c_7_76
Type: STP
Location: 79857 - 80405 (-)
Type: STP
Location: 79857 - 80405 (-)
Gene ID: Rep_3001_c_7_77
Type: TC
Location: 80445 - 80921 (-)
Type: TC
Location: 80445 - 80921 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
UBA1750
Genus
Spyradocola
Species
Spyradocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3001_c_7_75 | vegetarian > vegan | 1.24721 | 0.00701 |