Cluster: Rep_3001_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3001
- CGC Family ID: CGCFAM_03407
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3001_c_3 | Rep_3001_c_3_23 | 26226 | 27089 | - | 3.A.1.1.36 |
| TC | Rep_3001_c_3 | Rep_3001_c_3_24 | 27094 | 28053 | - | 3.A.1.1.36 |
| STP | Rep_3001_c_3 | Rep_3001_c_3_25 | 28171 | 29631 | - | SBP_bac_1 |
| TF | Rep_3001_c_3 | Rep_3001_c_3_26 | 30161 | 31036 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_3001_c_3 | Rep_3001_c_3_27 | 31091 | 33091 | - | GH31_4 |
Gene ID: Rep_3001_c_3_23
Type: TC
Location: 26226 - 27089 (-)
Type: TC
Location: 26226 - 27089 (-)
Gene ID: Rep_3001_c_3_24
Type: TC
Location: 27094 - 28053 (-)
Type: TC
Location: 27094 - 28053 (-)
Gene ID: Rep_3001_c_3_25
Type: STP
Location: 28171 - 29631 (-)
Type: STP
Location: 28171 - 29631 (-)
Gene ID: Rep_3001_c_3_26
Type: TF
Location: 30161 - 31036 (+)
Type: TF
Location: 30161 - 31036 (+)
Gene ID: Rep_3001_c_3_27
Type: CAZyme
Location: 31091 - 33091 (-)
Type: CAZyme
Location: 31091 - 33091 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
UBA1750
Genus
Spyradocola
Species
Spyradocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3001_c_3_23 | vegetarian > vegan | 1.51320 | 0.02576 |